Dinoroseobacter shibae: Dshi_1225
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Entry
Dshi_1225 CDS
T00612
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
dsh
Dinoroseobacter shibae
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsh03400
]
Dshi_1225
Enzymes [BR:
dsh01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Dshi_1225
DNA repair and recombination proteins [BR:
dsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Dshi_1225
Prokaryotic type
Dshi_1225
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
ABV92967
RoseoBase:
Dshi_1225
UniProt:
A8LIB3
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All DBs
Position
1267586..1269130
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AA seq
514 aa
AA seq
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MTDPAPILVWFKRDLRVADHPALARAAALGPVLPVYIVEPEYWQLRDVSARQWAFTRECV
ADLSRELAALGAPLRIETGEAVAVLERLRAAHGITLMISHEEIGNGWTYARDRAVADWAR
AQGVAWEELAQSGVVRRLNGRDGWARTRDRFMAQPQVAVPVLRGVDGGGGALPDAAALGL
ADDPCPGRQRGGRDEALSLLGGFLTERGRTYRAAMANPLDGAEACSRLSPHLALGTLSGR
EAVQAAAMRKAEVKGTRDGWIGAMKSFEARLAWRDHFMQKLEDAPRLEHACLHSAYEGLR
PAVPDPVRLGAWAKGETGLPFVDACMRSLIATGWLNFRARAMLVAVASYHLWLDWRASGT
ILGRYFTDFEPGIHWPQVQMQSGTTGMNTVRIYNPVKQGHDNDPEGVFTRRWLPELAEVP
DRYLQEPWRWEGADSVLNRTYPAPIVEPKAAAAAARDKVWAVRRGEAFRSEAARVVEKHA
SRKDAQGRFVNDRAPRKTRRRAPKAPPGQMSLDL
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatcccgcccccatccttgtctggttcaagcgcgacctgcgcgtggccgatcac
ccggcgctggcgcgggcggccgcacttgggcctgtcctgccggtttacatcgtggagccg
gagtattggcagcttcgggacgtctcggcgcggcagtgggcgttcacgcgggaatgtgtg
gcggacctgtcgcgggagcttgcggcgctgggcgcgcccttgcggatcgagaccggagag
gcggtcgcggtgctggagcggctgcgcgccgcgcacgggatcaccctgatgatcagccat
gaggagatcggcaatggctggacctatgcccgcgaccgggcagtggccgattgggcgcgg
gcgcagggcgtggcctgggaggagttggcgcaatccggggtcgtgcggcggctgaacggg
cgggacggctgggcgcgtacgcgggaccggttcatggcacagccgcaggtggcggtgccc
gtgctgcgcggtgtcgacggcgggggcggggccttgcccgatgcggccgcgctgggcctt
gccgacgatccctgcccggggcggcagcgcggcgggcgggatgaggccttgtccctgttg
ggcgggtttctgaccgagcggggccggacctaccgcgcggcgatggccaatccgctggac
ggggcggaagcgtgctcgcgcctgtcgccgcacctggcgctcggcaccctgtcggggcgg
gaggcggttcaggcggcggcaatgcgcaaggccgaggtgaagggcacgcgggacggctgg
atcggggcgatgaagagcttcgaggcgcggctcgcctggcgcgatcacttcatgcagaag
ctggaggatgcgccgcggctggagcatgcgtgcctccattcggcttatgaggggttgcgg
cccgcggtgccggacccggtgcggctgggggcctgggccaagggggagacgggattgccc
ttcgtcgatgcctgcatgcggtcgctgatcgccacggggtggctgaattttcgggcgcgc
gcgatgctggtggcggtggcgtcctatcacctgtggctggattggcgcgcctccggcacg
atcctggggcggtatttcaccgatttcgagccggggattcactggccgcaggtgcagatg
cagtcgggcaccacggggatgaacacggtgcggatctacaacccggtcaagcaggggcat
gacaacgaccccgagggcgtgttcacccgccgctggctgccggaactggcggaagttccg
gaccggtacctgcaggagccctggcgctgggagggggcggacagcgtgctgaaccggacc
tatcccgcgccgatcgtggagcccaaggccgcggcggcagcggcccgcgacaaggtctgg
gccgtgcggcgcggagaggcgtttcgcagcgaggccgcccgggtggtcgaaaagcacgcc
agccggaaggacgcgcaggggcggttcgtcaatgaccgcgccccgcgcaagacccgccgc
cgggcgccgaaggccccgccggggcagatgagcctcgacctgtga
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