Dinoroseobacter shibae: Dshi_1389
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Entry
Dshi_1389 CDS
T00612
Name
(GenBank) putative deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
dsh
Dinoroseobacter shibae
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsh03400
]
Dshi_1389
Enzymes [BR:
dsh01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Dshi_1389
DNA repair and recombination proteins [BR:
dsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Dshi_1389
Prokaryotic type
Dshi_1389
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
Motif
Other DBs
NCBI-ProteinID:
ABV93131
RoseoBase:
Dshi_1389
UniProt:
A8LJA9
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All DBs
Position
1442883..1444100
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AA seq
405 aa
AA seq
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MTPDTAFPPTRDAGLARLRDFLPKAAGDYTRGRNYDLPEQGHPHVSQLSPYLRHRLVTEG
EVLDAVLGRFSLKSAEKFVQEVYWRTYWKGWLERRPSVWMAYKGGLSQALDRLHVESGFR
AEWEAACKGETGIDGFDAWARELVSTGYMHNHARMWFASIWIFTLRLPWELGADFFLRHL
LDGDAASNTLSWRWVAGLQTQGKNYAARASNISKYTEGRHRPVHQLASDPAPLMGPPHPP
ADDAPVTPTFDRSASWVLVLTEDDLSPGFVLDQMANPPLATAILDGAAARSPLTVAPHVT
DWTSAALDSTCARYADRLGPVTPAPEDLGAWARGAGAAQIVMPYTPEGPARDLLRARLAD
SDLPLVPVLRDHDAAAWPHAKAGFFKFKEKIPALIARRQGLSLAS
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgacaccggacacagccttccccccgacccgtgacgcagggcttgcgcgcctgcgggat
ttcctgcccaaggcggcaggcgactacacccgtgggcgcaactacgacctgcccgagcag
gggcacccccatgtctcgcaactctcgccctatctgcgccaccggctggtgaccgagggc
gaggtgctcgatgccgtgctgggccgcttcagcctcaagtcggccgagaaattcgtgcag
gaagtctactggcgcacctactggaaaggctggctcgaacgccgcccgtcggtctggatg
gcctacaagggcgggctgtcccaggcgctcgatcggctgcatgtggaatccgggtttcgg
gccgaatgggaggccgcctgcaagggcgagacgggcatcgacgggttcgacgcctgggcg
cgggaactggtctcgaccggctacatgcacaatcacgcgcggatgtggttcgcctccatc
tggatcttcaccctgcgcctgccttgggagctgggcgccgatttcttcctgcgccatctg
ctcgacggggatgcggcctccaacacgctgagctggcgctgggtcgcggggttgcagacc
cagggcaagaattacgccgcgcgcgcgtccaacatctcgaaatacaccgaagggcggcac
cgcccggtccaccagctggcctccgatcccgcccccctgatgggcccgccccatccgccg
gccgatgacgcacctgtcaccccgaccttcgaccgcagcgcgtcctgggtgctggtgctg
accgaggatgacctgtcgccgggtttcgtgctcgaccagatggccaacccgcccctggcc
accgcgatcctcgatggcgccgccgcgcgctcgccgctgaccgtggcgccccatgttacg
gactggacctctgccgccctcgacagcacctgcgcgcgctacgcagaccggctgggtccg
gtgacgcccgcgcccgaagatctgggcgcctgggcgcgcggggcaggggcggcgcagatc
gtcatgccctacacccccgaaggccccgcccgcgatctgctgcgcgcgcgccttgccgat
agtgatttgccgctggtgccggtcctgcgcgaccacgatgccgccgcctggccccatgcc
aaggccgggttcttcaagttcaaggaaaagatccccgccctgatcgcccgccgacagggc
ctctcgctggcctcttga
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