KEGG   Dinoroseobacter shibae: Dshi_1785
Entry
Dshi_1785         CDS       T00612                                 
Symbol
nrdJ
Name
(GenBank) vitamin B12-dependent ribonucleotide reductase
  KO
K00525  ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Organism
dsh  Dinoroseobacter shibae
Pathway
dsh00230  Purine metabolism
dsh00240  Pyrimidine metabolism
dsh01100  Metabolic pathways
dsh01232  Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:dsh00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    Dshi_1785 (nrdJ)
   00240 Pyrimidine metabolism
    Dshi_1785 (nrdJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dsh03400]
    Dshi_1785 (nrdJ)
Enzymes [BR:dsh01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.4  With a disulfide as acceptor
    1.17.4.1  ribonucleoside-diphosphate reductase
     Dshi_1785 (nrdJ)
DNA repair and recombination proteins [BR:dsh03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   Modulation of nucleotide pools
    Dshi_1785 (nrdJ)
SSDB
Motif
Pfam: Ribonuc_red_lgC Ribonuc_red_2_N TSCPD TACO1_YebC_N Ribonuc_red_lgN
Other DBs
NCBI-ProteinID: ABV93527
RoseoBase: Dshi_1785
UniProt: A8LMI2
LinkDB
Position
complement(1854290..1857964)
AA seq 1224 aa
MKIERHFTKDGTDAYAGIEFSITASEIRNPDGTVVFRLDEVEVPSSWSQVASDVIAQKYF
RKAGVPAALKPVREKGVPEFLWRSVADEAALAKLPAEKRYGGETSARQVFRRLAGAWAYW
GWKGGYFSTEADARTYFDEMQLMLARQMAAPNSPQWFNTGLHWAYGIDGPAQGHYYVDHK
SGKLTKSTSSYEHPQPHACFIQSVADDLVNDGGIMDLWVREARLFKYGSGTGTNFSSLRA
EGEALSGGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIEEFVNWKVKE
EQKVASLVAGSKMHEAKLNEIFAAIGEWDGLGEDAVDPTKNAALKSAIRAAKKVQIPETY
IKRVLDYAKQGYASIEFPTYDTDWDSEAYNSVSGQNSNNSVRVTDAFLKAVKDDADWELI
RRTDGKVAKTIKARELWETIGHAAWACADPGIQFHDTVNDWHTCPEDGAIRGSNPCSEYM
FLDDTACNLASMNLLTFYRDGKFDSEGYMHAARLWTLTLEISVLMAQFPSKEIAQRSYDF
RTLGLGYANIGGLLMNMGYGYDSDEGRALCGALTAIMTGVSYATSAEIAAEVGPFPGYAK
NADHMLRVIRNHRNAAYGKTDGYEALATKPVALDHANCPDQTLVKLAMSSWDEALKLGEQ
HGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALDTL
GYSSAQIEEIIAYAVGHGTLGNAPGVNHTALIGHGFGPEQIEKIEAALPSAFDIRFVFNQ
WTLGEAFCTEVLGIPAAKLNDPTFDMLRHLGFAKKDIDLANDHVCGTMTLEGAPFLKAEH
YSVFDCANPCGKRGKRFLSVDSHIHMMAAAQSFISGAISKTINMPNDATIEDCQKAYELS
WSLGTKANALYRDGSKLSQPLAAALVEDDEEAAEVLETGSTMEKAQVIAEKIVEKVVIKE
VIKAHREKLPERRKGYTQKAIVGGHKVYLRTGEYADGNLGEIFIDMHKEGAGFRAMMNNF
AIAVSVGLQYGVPLEEFVDAFTFTKFEPAGMVQGNDSIKNATSILDYIFRELAVSYLDRT
DLAHVAPQGATFDDIGRGEEEGVSNVKEMSDSAASKSLEVLKQISSTGYLRKRMPQELVV
LQGGGKPVTAEIPVVGTIGGGEVATMTALRSETTVATTTSIDPRAKAKMQGYEGEACGEC
GNYTLVRNGTCMKCNTCGGTSGCS
NT seq 3675 nt   +upstreamnt  +downstreamnt
atgaaaatcgaacgccatttcaccaaagatggaactgacgcttacgccgggatcgagttc
tcgatcaccgcgtccgaaattcgcaaccccgatggtaccgtggtgttccggctcgacgag
gtcgaagtgcccagctcctggagccaggtcgcctcggacgtgatcgcgcagaaatacttc
cgcaaggccggcgttcccgccgccctgaagcccgtgcgcgaaaagggcgtgccggaattc
ctgtggcgctcggtggcagacgaggccgcgctcgccaagctgcccgcagagaaacgctat
ggcggcgaaacctccgcccgccaggtgttccgccgtctggcaggcgcctgggcctattgg
ggctggaaggggggctatttctccaccgaggccgatgcccgcacctatttcgacgagatg
cagctgatgctggcgcgccagatggccgcgccgaacagcccgcaatggttcaacaccggc
ctgcactgggcctacggcatcgacggtcccgcgcagggccactactacgtggatcacaag
tccggcaaactgaccaaatccacatcgtcctacgagcacccgcagccccatgcctgcttc
atccagtccgtcgccgacgacctggtgaatgatggcggcatcatggacctgtgggtccgc
gaggcgcggcttttcaaatacggctccggcaccggcacgaatttctcctcccttcgtgcc
gaaggagaggctctgtcaggcgggggtaagtcctccggcctgatggggttcctcaagatc
ggagaccgggccgcaggggccatcaagtccggtggcaccacacgccgggcagcgaagatg
gtgatctgcgacgccgatcaccccgatatcgaggaattcgtgaactggaaggtgaaggag
gagcagaaggtcgcctccctcgtcgccggctcgaaaatgcacgaggccaagctgaacgag
attttcgccgcgatcggcgaatgggacgggctgggcgaggacgcggtggaccccaccaag
aacgctgcgctgaaatccgcgatccgggccgccaagaaggtgcagatccccgagacctac
atcaagcgggtgctggattacgccaagcagggctatgcctccatcgagtttccgacctat
gataccgactgggattccgaggcgtataactcggtctccgggcagaactccaacaactcc
gtgcgcgtgaccgacgccttcctgaaggccgtcaaagacgacgcggattgggagctgatc
cgccgcaccgacggcaaggtcgccaagaccatcaaggcgcgcgagctgtgggaaaccatc
ggccacgcggcctgggcctgcgccgatcccggcatccagttccacgacaccgtcaacgac
tggcacacctgccccgaggatggcgcgatccgcggctccaacccgtgctcggaatacatg
ttccttgacgataccgcctgcaacctggcgtcgatgaacctgctgaccttctaccgcgac
ggcaagttcgacagcgaaggctacatgcacgcggcgcggctctggaccctgaccctggaa
atctcggtgctcatggcgcagttcccgtccaaggaaatcgcgcagcgctcctacgacttc
cgcaccctcggtctcggctatgccaatatcggcgggctgctgatgaacatgggctacggc
tatgacagcgacgaaggaagggcgctctgcggggcgctgaccgcgatcatgaccggggtg
agctatgccacctccgccgagatcgctgcagaggtcgggccgttcccgggttatgccaag
aacgccgatcacatgctccgcgtgatccgcaaccaccgcaacgcggcctatggcaagacc
gacggctacgaggcgctcgcgacgaaacccgtcgcgctggaccatgccaactgcccggac
cagacgctggtgaaactcgccatgtcctcctgggatgaggcgctgaagctgggcgagcag
cacgggtatcgcaatgcgcaagccacggtgatcgcacccacgggcaccatcggtctggta
atggattgcgacaccaccggcatcgagccggacttcgccctggtgaagttcaagaagctc
gcgggcggcggctacttcaagatcatcaaccgctcggtccccgcggcgctggacacgctg
ggctacagctcggcccagatcgaagagatcatcgcctatgcggttggccacggcacgctc
ggcaatgcgcccggcgtgaaccacaccgccctgatcggccacggcttcgggcctgagcag
atcgagaagatcgaggcggcgctgccttcggccttcgacatccggttcgtgttcaaccag
tggaccctgggcgaggcgttctgcaccgaggtgctgggcattcccgcggcgaaactgaac
gatccgaccttcgacatgctgcggcacctgggtttcgcgaagaaagacatcgatctggcc
aacgatcatgtctgcgggaccatgacgctggagggcgcgcccttcctgaaagccgaacac
tactcggtcttcgactgcgccaacccctgcggcaagcgcggcaagcggttcctgtcggtg
gacagccacattcacatgatggccgcggcgcagagcttcatctcgggcgcgatctcgaag
acgatcaacatgcccaacgatgccacgatcgaggattgccagaaggcctatgagctgagc
tggtcgctgggcaccaaggccaacgcgctctaccgcgacggctccaaactcagccagccg
ctcgctgcggcccttgtggaggatgacgaggaggccgcggaggttctggaaaccggctcc
accatggaaaaggcccaggtcatcgccgagaagatcgtcgagaaggtggtcatcaaggag
gtcatcaaggcccaccgcgaaaagctgcccgagcggcgcaagggttatacccagaaggcc
atcgtgggcggacacaaggtttatctgcgcacgggcgagtatgccgacggcaacctcggc
gagatcttcatcgacatgcacaaggaaggcgcgggcttccgggcgatgatgaacaacttc
gccatcgcggtctcggtcggcctgcaatacggcgtgccgctggaggagttcgtggatgcc
ttcaccttcaccaagttcgagcccgcgggcatggtgcagggcaatgacagcatcaagaac
gccacctcgatcctggattacatcttccgcgagctggcggtgagctatctcgaccgcacg
gatctggcccatgtggcgccccagggcgcgaccttcgacgatatcggccggggcgaggaa
gagggggtctccaacgtcaaggagatgtccgacagtgcggccagcaagtcgctggaggtg
ctcaagcagatcagctcgaccgggtatctgcgcaagcggatgccgcaggagttggtggtg
ctgcagggcgggggcaagccggtgacggcggagatcccggtcgtcggcacgatcggtggc
ggcgaggtggcgacgatgaccgcgcttcgcagcgaaacgaccgtggccacgacgacgtcg
atcgacccgcgcgccaaggccaagatgcagggctacgagggcgaggcctgcggcgagtgc
ggcaactacacgctggtgcgcaacggcacctgcatgaagtgcaacacctgcgggggtacg
tcgggatgcagctag

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