Dinoroseobacter shibae: Dshi_1886
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Entry
Dshi_1886 CDS
T00612
Name
(GenBank) putative Exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Dshi_1886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsh03400
]
Dshi_1886
Enzymes [BR:
dsh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Dshi_1886
DNA repair and recombination proteins [BR:
dsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Dshi_1886
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
ABV93628
RoseoBase:
Dshi_1886
UniProt:
A8LNB5
LinkDB
All DBs
Position
complement(1963398..1964177)
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AA seq
259 aa
AA seq
DB search
MQIATFNINGIKARINALPDWLREASPDVVVLQEIKSVDAAFPRELFEDMGYTVETHGQK
SFNGVAILSKLPLEDVTRGLPGDDGDEQARWIEATVMGDVPVRVCGLYLPNGNPAPGPKY
DYKLAWMARLKTRAAELLAAEEPALMAGDYNIIPLDEDAARPEAWRKDALALPASRAAFR
EILNLGFTDAFRTRVPGPGHYSFWDYQAGAWQRNDGIRIDHILMTPDCADLMRDCRIDAA
VRGGEKPSDHVPVVVDLAA
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcgcgacattcaacatcaacgggatcaaggcccggatcaacgccctgccggac
tggctgcgtgaggccagccccgacgtcgtcgtcctgcaagagatcaaatccgtcgacgcg
gccttcccacgggagctgttcgaggacatgggctacaccgtcgaaacccacggccagaag
agcttcaacggcgtcgccatcctgtcgaaactcccgctggaggatgtcacccgcggcctg
cccggcgatgacggcgacgaacaggcccgctggatcgaggcgaccgtgatgggcgacgtg
cccgtgcgcgtctgcgggctctacctgcccaatggcaaccccgcgccggggccgaaatac
gactacaaactggcctggatggcccggctgaagacccgcgcggcggaacttctggcggcc
gaggaaccggccctcatggcgggcgactacaacatcattcccctggacgaggacgccgcc
cgccccgaagcctggcgcaaggatgcgctggcgctgcccgcctcgcgcgcggccttccgc
gagatcctgaatctcggcttcaccgacgcgttccgcacccgcgtgcccgggccggggcat
tactcgttctgggattaccaggccggcgcctggcagcgcaatgacggcatccggatcgac
catatcttgatgacgccggactgcgcggacctgatgcgggactgccggatcgacgcggcc
gtgcgcggcggcgaaaagccgtccgatcacgtgcccgtggtggtggacctggcggcctga
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