Dinoroseobacter shibae: Dshi_2318
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Entry
Dshi_2318 CDS
T00612
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
dsh
Dinoroseobacter shibae
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsh03400
]
Dshi_2318 (phrB)
Enzymes [BR:
dsh01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Dshi_2318 (phrB)
DNA repair and recombination proteins [BR:
dsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Dshi_2318 (phrB)
Prokaryotic type
Dshi_2318 (phrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
ABV94054
RoseoBase:
Dshi_2318
UniProt:
A8LRM3
LinkDB
All DBs
Position
complement(2449473..2450903)
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AA seq
476 aa
AA seq
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MSSQTDRAPVIWWVRRDLRLSDNRALVAAVETGAPVIPVFLCDPILDSLGAAPKWRFGLG
AAALDAALRDRGSRLIYRKGDALETLRALVSETGAETVYWSRAYDPDQVARDKAVKSGLQ
DDGVDARSFTGHLLIEPWTVETGSGGFYKVYTPFWKAVRDRAMPEPQPAPDRIPAPDNWP
ESDRLDYWALGAAMNRGAAIVAPHLAIGEDAARGRLGAFIAHRVGDYDRARDIPGIEGTS
RLSENLTYGEIGPATCWQAGQRALAEGKAGAETFLKELVWREFAYHLVWHTPHLIEKNWR
AEWDHFPWRDDNADAETWRRGRTGIRFVDAAMREMYVTGTMHNRGRMIVASYLTKHLMTH
WRVGQAWFDDCLVDWDPASNAMGWQWAAGSGPDAAPYFRVFNPDTQLDKFDRDQSYQRRF
IAEGQGTPPEDARAYFDAIPRSWGLSPDDAYPDPIVPLDEGRKRALDAYQARKDAA
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcagaccgacagggcgccggtgatctggtgggtgcgccgggacctccggctg
agcgacaaccgggcgcttgtggcggcggtcgagaccggtgcgccggtgatcccggtcttc
ctctgcgatcccattctcgacagcctcggcgcggctcccaaatggcgcttcgggctcggg
gcggcggcgctggacgcagcccttcgggaccgcggctcgcggctgatctaccgcaaaggc
gacgcgctcgaaaccctgcgcgctctggtgtcggaaaccggtgccgagaccgtctactgg
agccgcgcctacgaccccgaccaggtcgcccgcgacaaggccgtcaaatccgggttgcag
gacgacggcgtggacgcgcgcagcttcaccgggcacctgttgattgagccttggacggtc
gagaccggctcgggcgggttctacaaggtctacacaccgttctggaaagcggtccgtgac
cgcgccatgcccgagccgcagcccgcccccgaccgcatccccgcccccgacaactggccc
gagagcgaccggctcgactactgggcactgggggccgccatgaaccgcggcgcggccatc
gtagcgccgcatctcgccatcggtgaggacgcggcccgcggtcggctcggcgcattcatc
gcccaccgggtcggggattacgaccgcgcccgcgacatccccggcatcgaaggcacctcg
cgcctgtcggaaaacctcacctatggcgagatcggccccgccacctgctggcaagcgggc
cagcgcgcgctggccgagggcaaggccggggcggagaccttcctcaaggagcttgtctgg
cgcgagttcgcctatcacctggtctggcacacgccccacctgatcgagaagaactggcgc
gcggagtgggaccacttcccctggcgcgatgacaatgcggacgcagagacctggcgccgg
ggccgcacgggcatccggtttgtcgatgcggccatgcgcgagatgtatgtcaccggcacc
atgcacaaccgcggccggatgatcgtggcctcttacctcaccaagcacctgatgacccat
tggcgggtcgggcaggcgtggttcgatgattgcctggtggattgggacccggcctccaac
gccatgggctggcaatgggcggcgggctccggccctgacgccgcgccctatttccgcgtg
ttcaaccccgacacccagctcgacaaattcgaccgcgaccagtcctaccaacgccgtttc
atcgccgaagggcagggcacgccgcccgaggatgcgcgcgcgtatttcgatgcgatcccg
cgcagctggggtctgtcgcccgacgacgcctacccggatccgatcgtaccgctggacgaa
ggccgcaagcgcgccctcgacgcctaccaggcgcgcaaggatgctgcataa
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