Dinoroseobacter shibae: Dshi_2340
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Entry
Dshi_2340 CDS
T00612
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dshi_2340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsh03019
]
Dshi_2340
03009 Ribosome biogenesis [BR:
dsh03009
]
Dshi_2340
Enzymes [BR:
dsh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Dshi_2340
Messenger RNA biogenesis [BR:
dsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dshi_2340
Ribosome biogenesis [BR:
dsh03009
]
Prokaryotic type
rRNA processing factors
Dshi_2340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ABV94076
RoseoBase:
Dshi_2340
UniProt:
A8LRP5
LinkDB
All DBs
Position
complement(2468813..2471893)
Genome browser
AA seq
1026 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGTKVEEFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALLAEEMAFATADAEEDEVKPKKRRSRRRKKVE
TSDEDAAEVTADSNAAEAETAQDADAADSPDAKDAPAVEAAQAAPEDVAEDAPTTETEAQ
TAEAEPAETAEADEDTAKPPMPHAVEGDDPTVKSEEVSEADADPQAEPGSPAAEEAPAED
APAEDKPVAEAAPRQTQSIPGMDVVETDSEAEDGPILVAEAAGAGPDGDKETAEKPKRRR
SRRRKKTDVEVSEEATDETAAADSDAADQDDGIEDVADEDVAEEIRRPRQRRERRYKIQE
VIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKL
KEIASEIEVPRGAGLIVRTAGAKRTKTEIKRDYDYLKRLWEQIRDLTLKSIAPAPIYEEG
NLIKRSIRDLYSRDIDEVLVEGEEGYRVAKDFMKMLMPSHAKNVKLYNENLPLFARYQVE
SYLAGMFNPTVQLKSGGYLVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVAR
QVRLRDLAGLIVIDFIDMEERRNNTAVEKRLKDKLKTDRARIQVGRISGFGLLEMSRQRL
RPGMLEITTQPCNHCHGTGLIRSDNSLALSIVRALEEEGMRRRVREVLVKAPVNVINYLF
NEKREHIALIEGRYGLSVRLEASNELSGADFTIDKFKTATRKVVELDAPVVSIDTSGVDE
AEIVEEPDEEEADTETEAETAATEETSEEQAPRKRRRRRRRSRRGGGTENGESNGDGSDE
AQSAADADSSDQADISEEAESSQPAVEAEAEEAPKPKRRRRRRRKSDAEEGEAAPDGDAV
SEDVSAPEPAPTPEPVAEAKADAPAAEAEPVAEAEAPVEPAESEAPAPEVDPTPETAETA
PVEHGDEASDTTDEETGQPVSEEASEAEAEDPQAVEPELAEAANEAAPAQDDDTKPKRRG
WWSLAR
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagatgctcatcgatgccacccacgcggaagagacccgcgttgtggtggtc
gacggaacgaaggtcgaggaattcgactttgagtcggtaaacaagcggcaacttgcggga
aatatctatctggcgaaagtgacacgggtcgagccgtccctgcaggcggccttcgtggac
tatggtggcaatcgccacgggttcctcgccttctcggaaattcacccggactactatcag
atcccggtggcggatcgcgaggcgttgctggccgaggaaatggcctttgcaaccgccgat
gcggaagaggacgaggtcaagccgaagaagcgccgttcccgtcgccggaagaaggtcgag
acgtcggacgaggacgcggccgaggtcactgccgacagcaatgccgccgaggccgagacg
gcacaggacgcggacgctgccgacagcccggatgcaaaagacgccccggcagtcgaggcg
gcgcaggctgcgccggaagatgtcgcagaggacgcgccgacaaccgagaccgaagcgcag
acagccgaggccgaaccggccgagaccgccgaggcggacgaagataccgccaagcccccc
atgccgcacgcggtagagggcgatgacccgaccgtgaaatccgaagaggtgagcgaggcc
gacgcggacccgcaagccgagcccggatccccggcagcggaggaggcccctgccgaggac
gcccctgccgaggacaagccggtcgccgaagccgcgccgcgccagacacagtccatcccc
ggcatggacgtggtcgagaccgacagcgaggccgaggacggtccgatcctcgtggccgaa
gccgcgggcgccggcccggatggcgataaggaaaccgccgagaagcccaagcgccgtcgc
agccgacgccgcaagaaaaccgatgtcgaggtgtccgaggaggccacggacgagaccgcg
gcggccgacagcgacgccgcagaccaggatgacggtatcgaggatgtggccgacgaggat
gtggccgaagagatccgccgcccccgccagcgccgggagcgccgctacaagatccaggaa
gtcatcaaggtccgtcaggtcctgctggttcaggtcgtcaaggaagagcgtggcaacaag
ggcgcggccctgaccacctatctcagcctcgcgggccgctactgcgtgttgatgcccaac
accgcccgcggcggcggcatcagccgcaagatcaccaatgcagtggaccgcaagaaactc
aaggagatcgcctccgagatcgaggtgccgcgcggcgcgggcctgatcgtgcgcacggcg
ggggccaagcggaccaagaccgaaatcaagcgggactacgactacctcaagcggctatgg
gagcagatccgcgacttgaccctgaaatccatcgcgcccgccccgatctatgaggaaggc
aacctcatcaagcgctcgatccgcgatctttacagccgcgatatcgacgaggtgctggtc
gagggggaagaaggctaccgggtggccaaggacttcatgaagatgctcatgccgtcccac
gccaagaacgtgaagctctacaatgagaacctgccgctctttgcgcggtatcaggtggaa
agctacctcgcgggcatgttcaaccccacggtgcagctgaaatccgggggctacctcgtg
atcggcgtgaccgaggcgctggtggcgatcgacgtgaactcgggccgggccaccaaggaa
ggctcgatcgaggagaccgcgctcaagacaaacctggaggccgccgaggaagtggcccgc
caggtccgcctgcgcgacctcgccggtctgatcgtgatcgacttcatcgacatggaagag
cggcgcaacaataccgctgtcgagaagcgtctgaaggacaagctgaagaccgaccgcgcg
cgcatccaggtgggccgcatctcgggctttggccttctggagatgtcgcgccagcgcctg
cgtccggggatgctggaaatcaccacccagccttgcaaccattgtcatggcaccgggctg
atccggtcggataattccttggcgctgtcgatcgttcgcgcgctggaagaagagggcatg
cgccgccgcgtgcgcgaggttctcgtcaaggcgccggtcaatgtcatcaactacctcttc
aacgaaaagcgcgagcatatcgcgctgatcgaggggcgctacggtttgtccgtgcggctg
gaggcctcgaacgaactttcgggggcggacttcaccatcgacaagttcaagaccgcgacc
cgcaaggtggtcgagcttgacgcgccggttgtgtcgatcgacacctcgggcgtggacgag
gccgagatcgtggaggagcccgacgaggaagaggccgacaccgagaccgaggcagagact
gccgccaccgaggagaccagcgaagagcaggccccgcgcaagcgccgccgccgtcgccgc
cgctcccgccggggcggtgggaccgagaacggcgagtccaacggagatggcagcgacgag
gcacaatccgccgcagacgcggactcctcggatcaagctgacatttccgaagaagcggag
tcctcccaaccggcggttgaggcagaggcagaagaggccccgaaacccaagcgtcgtcgg
cgtcgtcgccggaagtccgacgcagaagagggtgaagctgctcccgatggggatgctgtc
tctgaagacgtctctgcgcctgaacccgccccgacccccgagccggttgcggaggccaag
gccgacgcgcctgcggcggaagccgagcctgtagcggaggccgaagcgccggttgaaccc
gcagagtctgaggcgcccgccccggaggtcgatcccacgccggagacggccgaaacggcc
cctgtcgaacacggagacgaggcatccgacacgaccgatgaggagaccggccaaccggtc
tccgaagaggcatcggaagcggaggccgaagacccccaagccgtggagcccgagcttgca
gaggccgccaacgaggctgcgcccgcgcaggacgacgacaccaagcccaagcggcgcggg
tggtggtcgctcgcgcgctga
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