Dinoroseobacter shibae: Dshi_2419
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Entry
Dshi_2419 CDS
T00612
Symbol
ddl
Name
(GenBank) D-alanine--D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh00470
D-Amino acid metabolism
dsh00550
Peptidoglycan biosynthesis
dsh01100
Metabolic pathways
dsh01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Dshi_2419 (ddl)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Dshi_2419 (ddl)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
Dshi_2419 (ddl)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
dsh01011
]
Dshi_2419 (ddl)
Enzymes [BR:
dsh01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
Dshi_2419 (ddl)
Peptidoglycan biosynthesis and degradation proteins [BR:
dsh01011
]
Precursor biosynthesis
Amino acid ligase
Dshi_2419 (ddl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
B12-binding
LZ_Tnp_IS481
ATP-grasp_4
Motif
Other DBs
NCBI-ProteinID:
ABV94153
RoseoBase:
Dshi_2419
UniProt:
A8LS60
LinkDB
All DBs
Position
complement(2559329..2560255)
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AA seq
308 aa
AA seq
DB search
MRRDVSSKASPKVAMMMGGTSSERAVSLSSGRECGAALRAEGFEVIDLDAGPDLAARLED
LRPDVVFNALHGRWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERTKAAYAAAGLPIA
TSGLFTRAQIAARHVMPPPYVIKPYNEGSSVGVYLVPEGAEAAPELADDLPDTLMVEAFV
PGRELTVTVQGDRALCVTDIVTEGWYDYDAKYVPGGSRHVLPAEVPGDVYDACMAHAETA
HRVLGCRGISRTDFRWDPRRSLDGLALLETNTQPGMTPTSLTPEQAQHVGLGFGALCRWI
VEDASCDR
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgggacgtgtcgagcaaggcatcccccaaggtggccatgatgatgggcggtacc
tcgtcggaacgcgccgtgtccctgtcgtcgggacgcgaatgcggggctgcgctccgggca
gaggggttcgaggtgatcgacctcgatgcgggtccggacctggccgcgcggctcgaagat
ctgcgcccggacgtggtgttcaacgcgctccatggccgctggggggaggatggctgcgtg
cagggcctgctggaatggctgcgcatcccctatacccattcgggcgtgctggcctcggcc
ctggcgatggacaaggaacgcaccaaggccgcctatgcggcggccgggctgccgatcgcc
acgagcgggcttttcaccagggcgcagatcgccgcgcgccacgtgatgccgccgccttac
gtgatcaaaccctataatgagggctcgtccgtcggggtgtacctggtgcccgagggggcg
gaggccgcgccggagctggcggacgacctgcccgacacgctgatggtggaggccttcgtg
cccgggcgggagctgaccgtgaccgtgcagggggaccgcgcgctctgtgtcaccgatatc
gtgaccgagggctggtacgattacgacgcgaaatacgtccccggcgggtcgcgccatgta
ttgccggccgaggtgcccggggatgtctacgacgcctgcatggcccatgccgagaccgcg
caccgggtactcggctgccgcgggatctcgcgcaccgatttccgctgggatccgcgccgc
agcctcgatgggctggccctgctggagaccaacacccagccggggatgacgcccacctcc
ctgacccccgaacaggcgcagcatgtggggctgggcttcggcgcgctctgccgctggatc
gtggaggacgcctcatgcgaccgttga
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