Dinoroseobacter shibae: Dshi_2715
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Entry
Dshi_2715 CDS
T00612
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dshi_2715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsh03019
]
Dshi_2715
Enzymes [BR:
dsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dshi_2715
Messenger RNA biogenesis [BR:
dsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dshi_2715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Helicase_RecD
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABV94448
RoseoBase:
Dshi_2715
UniProt:
A8LIK7
LinkDB
All DBs
Position
2876659..2877963
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AA seq
434 aa
AA seq
DB search
MLGLSPRLVAGLAAQNITDPTPIQTRAIPHGLNGRDVLGIAQTGTGKTAAFGLPLLDALM
KAGTKPAPRTCRGLILAPTRELVSQICESLRAFTEGSHLKLQVIVGGVAIGPQIKRAERG
ADLIVATPGRLIDLLDRKALRLSETRFLVLDEADQMLDLGFIHALRKIAPLLPAERQTML
FSATMPKQMEELSRAYLTDPARVEVAPPGKIADKITQSVHFVEQGAKTQLLIDLLGNHRD
ELALVFSRTKHGADRLARKLSNAGFETAAIHGNRSQGQRERALKAFREGTLKVLVATDVA
ARGIDIPDVRFVYNFDLPNVPENFVHRIGRTARAGRDGQAVAFCAPEEMGELRAVQKVMG
LTLPVAGGTPWEVMDEPSKPRRGGGGRGRGPGGGGGQRRGSGGGKPTGQGKPQPKPQGKP
ANKRRRPRRARAAA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgctggggctctcgccccgcctcgtggccggccttgccgcccagaacatcaccgacccg
accccgatccagacccgcgcgatcccgcacgggctcaacgggcgcgacgtgctgggcatc
gcccagaccggcaccggcaagaccgcggccttcgggctgcccctgctcgatgcgctgatg
aaggcgggcaccaagcctgcgccgcgcacctgccgcgggctgatcctcgcccccacgcgg
gaattggtgagccagatctgtgagagcctgcgcgccttcaccgaaggctcccatctcaag
ctgcaggtgatcgtgggcggtgttgccatcggcccgcagatcaagcgcgccgagcggggc
gccgacctgatcgtggccacgcccggccgtctgatcgacctgctggaccgcaaggccctg
cgcctgagcgaaaccaggttcctggtgctggacgaggccgaccagatgctggatctcggc
ttcatccatgccctgcgcaagatcgcgccgctcctgcccgcggaacgccagaccatgctg
ttttcggccaccatgcccaagcagatggaagagctcagccgcgcctacctgactgatcct
gcgcgggtcgaggtcgcgcctccgggcaagatcgccgacaagatcacccagtcggtgcat
ttcgtcgaacagggcgccaagacgcagctgctgatcgaccttctcggcaatcaccgggac
gagttggcgctggtcttctcgcgcaccaagcacggggccgaccggctggcgcgcaagctg
agcaacgcgggcttcgagaccgccgcgatccacggcaaccgcagccagggccagcgggag
cgcgcgctcaaggccttccgcgagggcacgctcaaggtgctggtggccacggatgtggct
gcccgggggatcgacatccccgatgtgcgcttcgtctacaatttcgacctgcccaacgtg
ccggagaatttcgtgcaccggatcggccggaccgcccgcgcgggccgcgatggccaggcg
gtcgccttctgcgcgcccgaggaaatgggcgagctgcgcgcggtgcagaaggtcatgggc
ctgaccctgcccgtggccggcggcaccccgtgggaggtgatggacgagccgtccaaaccc
cgccgcggcggcggtggtcgcgggcgcggccccggcggtggtgggggccagcgtcgcggc
agcggcggcggcaagccgaccggccagggcaagccccagccgaagccccagggcaaaccg
gccaacaagcgccgccgcccccggcgcgcccgcgccgcggcgtaa
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