Dinoroseobacter shibae: Dshi_2887
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Entry
Dshi_2887 CDS
T00612
Symbol
gabD
Name
(GenBank) NADP(+) dependentsuccinate-semialdehyde dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh00250
Alanine, aspartate and glutamate metabolism
dsh00310
Lysine degradation
dsh00350
Tyrosine metabolism
dsh00650
Butanoate metabolism
dsh00760
Nicotinate and nicotinamide metabolism
dsh01100
Metabolic pathways
dsh01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
Dshi_2887 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
Dshi_2887 (gabD)
00310 Lysine degradation
Dshi_2887 (gabD)
00350 Tyrosine metabolism
Dshi_2887 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
Dshi_2887 (gabD)
Enzymes [BR:
dsh01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
Dshi_2887 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
Dshi_2887 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
Dshi_2887 (gabD)
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Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
ABV94620
RoseoBase:
Dshi_2887
UniProt:
A8LJL7
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Position
complement(3043208..3044686)
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AA seq
492 aa
AA seq
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MLDTVTELREHLKDPALLASKAYFAGAWTDADSGATFPVTNPARGDVIAHVPDLGRAETA
RAIAAADAAQKPWAARTAKDRAQVLRRWFDLIVGNADDLARILTAEMGKPLAEARGEVMY
GASFVEWFAEEAKRLYGETIPGHLPDARIQVIRQPIGVVGAITPWNFPIAMITRKAAPAL
AAGCAFLSKPAEDTPLSALALAVLAERAGIPAGLFAVLPSSDSSAIGKEFCENHTVRKLT
FTGSTQVGRILLAQAADQVKKCSMELGGNAPFIVFDDADLDKAVEGAMACKFRNAGQTCV
CANRIYVQDGVYDAFAEKLAAAVEELKVGDGAAEGVTIGPLINMPAVEKVQDHLDDLRAK
GGTVVTGGETHPLGGTFFTPTVVTGVTQEMKVAREETFGPVAPLFRFTEEDEVIAMANDT
IFGLAGYFYARDIGRITRVSEALEYGIVGINTGIISTEGAPFGGVKQSGLGREGSRHGID
EYLEMKYICLSI
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgctcgatacagtgacggaattgcgggaacacctgaaggatcccgcgctcctggccagc
aaggcctatttcgcgggtgcctggacggatgcggacagtggcgcgaccttcccggtgacc
aacccggcgcgcggcgacgtgatcgcccatgtgcccgacctgggccgggccgagaccgcc
cgcgccatcgccgccgcagacgccgcgcagaagccctgggccgcgcgcaccgccaaggac
cgcgcgcaggtgttgcggcgctggttcgacctgatcgtcgggaatgccgacgacctggcg
cggatcctgaccgccgagatgggcaagccgctggccgaagccaggggcgaggtgatgtat
ggcgcgtctttcgtggaatggttcgccgaagaggccaagcgcctctatggcgagaccatc
ccgggtcatttgccggacgcgcgcatccaggtgatccgccagcccattggcgtggtgggg
gcgatcaccccgtggaacttccccattgccatgatcacccgcaaggccgcgccggcgctg
gcggccggctgcgccttcctgtcgaaaccggccgaggacacgccgctctcggcgctggcg
ctggcggttctggccgaacgggcggggatccctgcagggctcttcgccgtgctgccgagc
agtgattcctcggccattggcaaggaattctgcgagaaccataccgtgcgcaagctgacc
ttcaccggctcgacccaggtggggcgcatcctgctggcgcaagccgccgatcaggtgaag
aaatgctcgatggagctgggcggcaacgcgcccttcatcgtgttcgacgatgccgatctc
gacaaggcggtcgagggggcgatggcctgcaagttccgcaacgcgggccagacctgcgtc
tgcgccaaccggatctatgtgcaggacggggtctatgacgccttcgccgagaagctggcc
gccgcggtggaggagctgaaggtcggggatggcgcggccgagggtgtgaccatcggcccg
ctgatcaatatgcccgcggtggagaaggtgcaggatcacctcgacgacctgcgcgccaag
ggtggaacggtcgtgaccgggggcgagacacatcccctcggcggcacgttcttcaccccc
acggtggtgaccggcgtgacgcaggagatgaaagtggcgcgggaggaaaccttcggcccg
gtcgcgccgctcttccggttcacggaggaggacgaggtcatcgccatggccaatgacacg
atcttcgggctcgcggggtatttctacgcccgcgacatcggccggatcacccgggtgtcc
gaggcgctggaatacggcatcgtcgggatcaacaccggcatcatctcgaccgaaggggcg
cccttcggcggggtcaagcaatcggggcttgggcgcgaagggtcccgccacgggatcgac
gagtatctcgagatgaaatacatctgcctgtcgatctga
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