Dinoroseobacter shibae: Dshi_2909
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Entry
Dshi_2909 CDS
T00612
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh03030
DNA replication
dsh03410
Base excision repair
dsh03420
Nucleotide excision repair
dsh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dshi_2909 (polA)
03410 Base excision repair
Dshi_2909 (polA)
03420 Nucleotide excision repair
Dshi_2909 (polA)
03440 Homologous recombination
Dshi_2909 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dsh03032
]
Dshi_2909 (polA)
03400 DNA repair and recombination proteins [BR:
dsh03400
]
Dshi_2909 (polA)
Enzymes [BR:
dsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Dshi_2909 (polA)
DNA replication proteins [BR:
dsh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dshi_2909 (polA)
DNA repair and recombination proteins [BR:
dsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Dshi_2909 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dshi_2909 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
Taq-exonuc
Motif
Other DBs
NCBI-ProteinID:
ABV94642
RoseoBase:
Dshi_2909
UniProt:
A8LJN9
LinkDB
All DBs
Position
complement(3067301..3070099)
Genome browser
AA seq
932 aa
AA seq
DB search
MAFGKGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYVEGNAGGDVT
HVAVIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEMEGFEADD
IIATLACQAREAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKTIDVDGVFEKFGVGPDRV
VDVQALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAGEIKQPKRRQTLIEHRAQ
IELSKRLVQLDCDMELDFTIEDLEVRDPEPETLLGFLAEMEFRTLTKRISGALGVEAPAV
PEPAATTASPEAEEHPPLSASEHVTIRDAETLQSWIDAIHARGVVAVDTETTGLNEMRAD
LVGVSLCVDPGRAAYLPLAHKDGGGADDLFGGEAKLAEGQLDFETALGMLKPVLEDPAVL
KIGQNMKYDAKILARNGITVAPIDDTMLLSYALHAGLHGHGMDALSERYLDHTPIPIKTL
LGTGKSAITFDFVPIEEATKYAAEDAEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVL
AEMEMRGIKVDRDTLSRMSNAFAQKMAGLEAEIHELAGESFNVGSPAQLGEILFEKMGFE
GGKTGKSGKYSTPADVLEDLATEHDLPRRVLDWRQLSKLKSTYTDALQDHINPETGRVHT
SYSIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAEPGHVLVSLDYSQIELRILAHI
AGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINFGVIYGISGFGLARNL
RIPRAEAQAFIDTYFERFPGIRAYMDDTVAFAKEHKYVQTLFGRKIHTPEIGAKGPQAGF
AKRAAINAPIQGTAADIIRRAMVRMPAAIADLPARMLLQVHDELIFEVEEDAVDRVIPAV
RQVMEGAAAPVVHLDVPLTVDAGQGRSWAEAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcattcggcaagggacatcacctgcatctgatcgacggatcggcgttcattttccgc
gcctatcacgcgttgccgccgctgacacggaagtccgacgggctgcccgtcggggcggtg
tcgggcttctgcaacatgctgcagcgctatgtcgaagggaacgccgggggcgacgtgacc
catgtggcggtgatcttcgacaagggcagccatacctttcgcaatgatctttacgaccag
tacaaggccaaccgcgaggcgatgcccgaggacctgcgcccgcagatccccctgacccgg
accgcgaccgaggcgttcaacatcgcctgcaaggagatggaggggttcgaggcggacgat
atcatcgcgacgctggcctgccaggcgcgcgaggccggggggcgctgcacgatcatcagc
tcggacaaggacctgatgcagctggtcggcggcggggtcgagatgctggatgcgatgaag
aacaagaccatcgacgtggacggggtgttcgagaaattcggcgtgggccccgaccgggtg
gtcgatgtgcaggcgctggccggggattcggtggacaacgtgcccggcgcgccggggatc
gggatcaagaccgcggcgctgctgatcaacgagtatggctcgctcgaggagcttctggac
cgggccggggagatcaagcagcccaagcgccgccagaccctgatcgagcatcgcgcccag
atcgagctgtcgaagcggctggtgcagctcgattgcgacatggagctggatttcacaatc
gaggatctggaggtgcgcgatccggagcctgagaccctgctggggtttttggcggagatg
gagttccgcacgctgacaaagcggatctcgggcgcgttgggggtggaggcgcccgccgtg
ccggagcccgcagcgacgacggcctcgccagaggcggaggagcacccccccctgagcgcc
tcggagcatgtcaccatccgcgacgcggaaaccctgcaaagctggatcgacgcgatccat
gcgcgcggggtggtggcggtggataccgagaccacgggcctcaacgagatgcgcgcggat
ctggtgggcgtgtcgctctgcgtggatccggggcgcgcggcctacctgccgctggcgcac
aaggacggtggcggggccgacgacctgttcggcggggaggcgaagctggccgaggggcag
ctggattttgagaccgcgcttgggatgctcaagcccgtgctggaggaccctgcggtcctg
aagatcgggcagaacatgaaatacgatgccaagatcctcgcccggaacgggatcacggtg
gcgcccatcgacgacacgatgctgctgagctacgcgctccatgccgggttgcacgggcac
gggatggacgcgctgtcggagcggtatctcgaccacacgccgatcccgatcaagaccctg
ctgggcaccggcaaatccgcgatcactttcgatttcgtgcccatcgaggaggcgacgaaa
tacgccgccgaggatgcggaaatcacgctgcgcctgtggcagcgcttgaagccgcgcctg
catctggcgcaggtcacccgcgtctacgagtggatggagcggcccatggtgccggttctg
gccgagatggagatgcgcgggatcaaggtcgatcgcgacaccctgagccggatgtcgaac
gcgttcgcgcagaagatggccgggctggaggcggaaatccacgaactggcgggggagagt
ttcaacgtgggcagccccgcccagctgggcgagatcctgttcgagaagatgggcttcgag
gggggcaagaccggcaagtcgggcaagtattcgaccccggcggatgtgctggaggatctc
gcgaccgagcatgacctgccgcgccgggtgctcgactggcggcagctgtcgaagttgaaa
tcgacctacacggacgccttgcaggatcatatcaaccccgagaccgggcgggtgcatacg
tcctactcgattgccggggcgaatacggggcggttggcttcgaccgatccgaacctgcag
aacatccccgtgcgctccgaggaggggcggcgcattcgcgaggccttcgtggcggagccg
gggcatgtgctcgtgtcgctcgactatagccagatcgagctgcggatcctcgcccatatc
gccgggatcgacgcgctgaagaccgcgttccgggacgggctggacattcatgcgatgacc
gcgtcggagatgttcgatgtgccgctggacgagatgacgccggaggtgcggcgccaggcc
aaggcgatcaatttcggggtgatctacgggatttcgggctttggcctcgcgcggaacctg
cggatcccgcgggcggaggcgcaggccttcatcgacacctatttcgagcggttccccggc
atccgggcctatatggacgacacggtcgccttcgcgaaggagcataaatacgtgcagacc
ctgttcgggcggaagatccacacgccggagatcggcgcgaaggggccccaggcgggcttc
gccaagcgcgcggcgatcaacgcgccgatccagggaacggcggcggatatcatccggcgc
gcgatggtgcggatgcccgcggcgattgccgacctgcccgcgcggatgctgctccaggtc
catgacgagctgatcttcgaggtggaggaagacgcggtggaccgggtgatcccggcggtg
cgccaggtgatggagggggccgccgcgccggtggtgcatctcgatgtgccgctgacggtg
gatgcgggccaggggcgaagctgggcggaggcgcattag
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