KEGG   Dinoroseobacter shibae: Dshi_2978
Entry
Dshi_2978         CDS       T00612                                 
Symbol
rpoH1
Name
(GenBank) RNA polymerase sigma 32 factor
  KO
K03089  RNA polymerase sigma-32 factor
Organism
dsh  Dinoroseobacter shibae
Brite
KEGG Orthology (KO) [BR:dsh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dsh03021]
    Dshi_2978 (rpoH1)
Transcription machinery [BR:dsh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Dshi_2978 (rpoH1)
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4
Other DBs
NCBI-ProteinID: ABV94711
RoseoBase: Dshi_2978
UniProt: A8LKC8
LinkDB
Position
complement(3145214..3146095)
AA seq 293 aa
MALDGYSGEMSLSRRAMQAELLDAETELRLAYAWRDQRDEEALHRLITAYMRLAISMAAK
FKRYGAPMNDLIQEAGLGLMKAADKFDPDRGVRFSTYAVWWIKASIQDYVMRNWSMVRTG
STSSQKSLFFNMRRVQARLEREAASAGEPLDRHQLRQMIATEVGVPLHDVEMMEGRLAGS
DYSLNATQSTEDEGREWIDTLEDTGAQAAELVEQDHDIETLRGWLITAMDALNERERFIV
RERKLRDQPRTLESLGQELGLSKERVRQLEAAAFGKMRKNLMNQSSEVRQFFA
NT seq 882 nt   +upstreamnt  +downstreamnt
atggcgctagacggatattcaggtgaaatgagtttgtcccggcgtgcgatgcaggccgaa
ttgctcgacgcggaaacggagctgaggctggcctatgcctggcgcgatcagcgggacgaa
gaggcgctgcaccgcctcatcaccgcgtatatgcgccttgcgatctcgatggcggcgaaa
ttcaagcgctacggcgccccgatgaacgacctgatccaggaagcgggtctgggcctcatg
aaggccgctgacaagttcgacccggatcgcggtgtgcggttctcgacctatgcggtgtgg
tggatcaaggcgtcgatccaggattatgtgatgcggaactggtcgatggtgcggacgggg
tccacctcgtcccagaagtcgctgttcttcaatatgcgccgggttcaggcccgtctggag
cgcgaagcggcctcggcgggcgagcccctcgaccggcaccagctgcgccagatgattgcc
accgaggtcggtgtgcctctgcatgacgtcgagatgatggaaggacgcctcgcgggctcc
gactattccctgaacgccacccagtcgaccgaggacgagggccgcgaatggatcgacacg
ctggaagacaccggcgcgcaagccgccgaactggtcgagcaggatcatgatatcgagacc
ctgcgcggctggctgatcacggcgatggacgcgctgaacgagcgggaacgcttcatcgtg
cgcgagcgcaagctgcgcgaccagccgcggacattggaaagcctcggccaagagttgggc
ctgtctaaagagcgtgtgcggcagctcgaagcggccgccttcggcaagatgcgcaagaac
ctgatgaaccagtcttccgaggttcgccaattcttcgcctga

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