Dinoroseobacter shibae: Dshi_3007
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Entry
Dshi_3007 CDS
T00612
Symbol
ybgG
Name
(GenBank) alpha-mannosidase
KO
K01191
alpha-mannosidase [EC:
3.2.1.24
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh00511
Other glycan degradation
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00511 Other glycan degradation
Dshi_3007 (ybgG)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dsh04131
]
Dshi_3007 (ybgG)
Enzymes [BR:
dsh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.24 alpha-mannosidase
Dshi_3007 (ybgG)
Membrane trafficking [BR:
dsh04131
]
Autophagy
Cytoplasm to vacuolar targeting (CVT) pathway
Selective cargos
Dshi_3007 (ybgG)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_38N
Glyco_hydro_38C
Alpha-mann_mid
Glyco_hydro38C2
SHS2_FTSA
Motif
Other DBs
NCBI-ProteinID:
ABV94740
RoseoBase:
Dshi_3007
UniProt:
A8LKF7
LinkDB
All DBs
Position
complement(3172670..3175837)
Genome browser
AA seq
1055 aa
AA seq
DB search
MKHQIFWTEQKILSRLPLIAPLVHRRAAPIPPFRYLPLDSPRAEAPVGRDVDTADWAEIP
FDSYWGDWSQDFVLRSEFAVPEGFGIHGPVALHLPLGVAGDIFCHPEALAYIDGTGFASA
DRQHHEIYLDPDLCDGARHSLALHGWTGLSGWPPDRNARTKLFMKPCAVVEIDTPTRELV
ALVSRALDVASHMEDGNTARSRILRALDLCFKALDTRDPIRSDAFYDSVPTALATLREAL
EGYKGRMEVDILAIGHAHIDIAYLWQVDQTRRKCGRSFSNVLKLMEEFPDYHFSASQPVL
YEMTEADYPQVFDGIRARVAEGRWEPMGGMWVEPDCNLAGGESLVRQLMYGRRYFIDKFG
ETAETPVLWLPDTFGFTAALPQLMQQAGLKWFVANKLNWNQYNQMPNQLFWWEGIDGSRV
LSHFLTTPSTVQYLPHPTTYKAEMTAREVFGTWDNFRQKHLHQELITCFGYGDGGGGPTR
ELIEAARAYAELPGTPSVRMGTVREFFERVEENAAHDLPTWSGEFYLELHRGTLTSQARI
KRANRKAEVLLHDAEFLASLAGVITDHPYPGDALEEAWKLVLLNQFHDILPGTSITQVFE
DATRDYAKVTEIGTAARDTALAALTTRMPPEAQVMAVNPTGFSVDRIGWIAEPVAGLCDL
RTNRPLRTQPVADGTLIDLPALPGYAALGLGPCAEAPEPTSLRITDFPDGAVLENDLIRV
HVAPNGQLVSVFDKTALREVLAADAFGNQLLAFEDRPMVWDAWDIDIFYEDRCEVIDAPV
RFEITERGPLRASLEVEHHWRGSTITQRISLHHNSKRIEFKTDVDWQTSHILLKCAFPVE
VFSPRATYDIQFGNTERTTHRNTSWDWARFESVGHKWADLSEGNYGVALLNDCKYGYDIH
HNVMRLSLLKSATMPDPVQDRGRHEMTYALLPHEGNWRSDVTESGYILNNPVLCRPVAAG
QGDAALVQMVGVSGFSTVIDTVKRAEDGQGYIVRLFENERTRGPVTLRFGFDLGEVRAVT
ILEDDIGPVAMRGREVTVELTPYKIVSLRVIPAGA
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaccagatcttctggaccgagcagaaaatcctcagccgcctgccgctgatcgcg
ccgctggtccaccgccgtgctgccccgatcccgcccttccggtacctgccgctggacagc
ccgcgggccgaggccccggtgggccgcgatgtggataccgccgactgggccgagatcccg
ttcgacagctattggggcgactggagccaggatttcgtcctccgctccgagttcgcggtg
cccgaaggcttcggcatccacggccccgtcgccctgcacctgccgctcggggtcgcgggc
gacatcttctgccaccccgaggcgctggcctatatcgacgggaccggctttgcctccgcc
gaccgtcagcaccacgagatctacctcgaccccgacctctgcgacggcgcgcgccacagc
ctcgcgctccatggctggaccgggctcagcggctggccgcccgaccgcaacgccaggacc
aagctcttcatgaagccctgcgccgtggtcgagatcgacacgcccacacgcgagctggtg
gcgctcgtgagccgtgcgctggacgtggccagccacatggaggacggcaacaccgcccgg
agccggatcctccgcgcgctcgatctgtgcttcaaggcgctcgacacccgcgaccccatc
cgctccgacgccttctacgacagcgtccccacggccctggccacgctgcgcgaagcgctg
gaaggctacaagggccggatggaggtcgacatcctcgccatcggccacgcccatatcgac
atcgcctacctgtggcaggtcgaccagacccggcgcaaatgcgggcgcagcttctccaac
gtgctcaagctgatggaggaatttcccgactaccatttcagcgcctcgcaaccggtcctc
tacgagatgaccgaggccgactacccgcaggtcttcgacggcatccgcgcccgcgttgcc
gaaggccggtgggagccgatgggcggcatgtgggtcgagccggattgcaacctcgcgggc
ggcgagagcctcgtgcggcagctgatgtacgggcggcgctatttcatcgacaagttcggc
gaaaccgccgagacccccgtgctctggctgcccgacacgttcggcttcaccgccgccctg
ccgcagctgatgcaacaggccgggctgaagtggttcgtcgccaacaagctgaactggaac
cagtacaaccagatgcccaaccagttgttctggtgggaaggcatcgacggctcgcgcgtg
ctcagccacttccttacgaccccctccacggtgcaatacctgccccatcccaccacctac
aaggccgagatgaccgcgcgcgaggtcttcggcacctgggacaatttccgccagaaacac
ctgcaccaggaattgatcacctgtttcggctacggcgatggcggtggcgggccgacccgc
gagttgatcgaggcggcccgcgcctatgccgaattgcccggcacgccctcggtgcgcatg
ggcaccgtgcgggagtttttcgagcgcgtcgaggaaaacgccgcccatgacctgcccacc
tggtccggcgagttctacctggaactgcaccgcggcaccttgaccagccaggcccggatc
aagcgcgccaatcgcaaggcggaggtgctgctgcacgacgccgagttcctcgcgagcctc
gcgggggtcatcaccgaccacccctatccgggcgacgcgctcgaagaggcgtggaaactc
gtccttctgaaccagttccacgacatcttgcccggcacctcgatcacccaggtgttcgag
gatgcgacccgcgactacgccaaagtgaccgagatcggcaccgccgcgcgcgacacggcc
ctcgccgccctcaccacccggatgccgcccgaggcgcaggtgatggccgtgaaccccacc
gggttttccgtggaccggatcggctggatcgccgaaccggtggcggggctgtgcgacctg
cgcaccaaccgccccctgcgcacccaacccgtggccgatggcaccctgatcgacctgccc
gccctgccgggctatgccgcgctcggcctcggaccctgcgccgaggcgcccgagcccacg
tcgctgcgcatcaccgacttcccagatggcgccgttctggaaaacgacctgatccgggtc
catgtcgcgcccaacgggcagctcgtgtcggtcttcgacaagaccgccctgcgcgaggtg
ctcgccgcagacgccttcggcaaccagctccttgccttcgaggaccgacccatggtctgg
gatgcctgggatatcgacatcttctacgaagaccgctgcgaggtgatcgacgcgcccgtg
cggttcgagatcaccgaacgcggtcccctgcgcgcatcactggaggtcgaacaccattgg
cgcggctccaccatcacccagcgcatcagcctgcatcacaactccaaacggatcgagttc
aagaccgacgtggactggcaaacctcccatatcctgctcaaatgcgccttcccggtggag
gtcttctccccccgtgccacctacgacatccagttcggaaataccgaacgcaccacccac
cgcaacaccagctgggactgggcccggttcgaaagcgtcgggcacaaatgggcggacctg
agcgaaggcaactatggcgtcgccctgctcaatgattgcaaatacggctacgacatccac
cacaacgtgatgcgcctgagcctgctgaaatccgccaccatgcccgacccggtgcaggac
cgcggccgccacgagatgacctatgcgctcctgccgcatgaaggcaactggcgctccgac
gtgaccgagagcggttatatcctcaacaacccggtgctttgccgacccgtcgcggccggg
cagggcgacgcagccctggtgcagatggtcggcgtctcgggcttttcgaccgtgatcgac
acggtcaaacgggccgaggacgggcagggctatatcgtgcgtcttttcgagaacgagcgc
acgcgcggccccgtcacgctacgtttcgggttcgacctgggcgaggtgcgcgccgtcacc
atcctggaggacgacatcggcccggtggccatgcgcggccgggaggtcacggtggaactg
acgccctacaagatcgtgtcgctccgtgtgatccccgccggggcctga
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