Dinoroseobacter shibae: Dshi_3311
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Entry
Dshi_3311 CDS
T00612
Name
(GenBank) radical SAM enzyme
KO
K06941
23S rRNA (adenine2503-C2)-methyltransferase [EC:
2.1.1.192
]
Organism
dsh
Dinoroseobacter shibae
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dsh03009
]
Dshi_3311
Enzymes [BR:
dsh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.192 23S rRNA (adenine2503-C2)-methyltransferase
Dshi_3311
Ribosome biogenesis [BR:
dsh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Dshi_3311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
RlmN_N
Radical_SAM_2
Motif
Other DBs
NCBI-ProteinID:
ABV95044
RoseoBase:
Dshi_3311
UniProt:
A8LNF0
LinkDB
All DBs
Position
complement(3474155..3475375)
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AA seq
406 aa
AA seq
DB search
MSRAFPSLSSMPMSATSPITQDVVTFPRKLPEGGKRNLVGLTRPELAEALAAAGTPEKQV
KMRVNQIWQWLYERGVRDFNDMTNLAKPYRALLADQFEIAVPEVVSRHVSEDGTRKYLVR
IAGGHEVEVVYIPEEDRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQIMIARD
DLGEWPLPGRNPKNETRLLSNIVLMGMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLS
TSGVVPEIARTAEEIGCMLAVSFHATTDEVRDKLVPINKRWNIATLLDALRDYPKASNSE
RITFEYVMLKGVNDSDEDARRLVELIKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADI
IYKAGYASPIRTPRGEDIMAACGQLKSATERARKSRAQIAAETGLG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgggctttcccaagtttatcgagcatgcccatgtccgccacgtcgccgatcacg
caggatgtcgtcacctttccgcgcaagctgccggaggggggcaagcgcaatctcgtgggc
ctgacccggcccgaactggccgaggcgctggcagcggcgggcacgcccgaaaagcaggtc
aagatgcgggtcaatcagatctggcaatggctttatgaacgcggcgtgcgcgatttcaac
gacatgacgaacctcgccaagccctaccgcgccctgctggccgatcagttcgagatcgcc
gtgccggaggtcgtcagccgccatgtctcggaggacgggacgcgcaagtacctggtgcgg
atcgcgggcgggcacgaggtggaggtcgtctatatccccgaggaggatcgcggcacgctg
tgtgtctcgtcccaggtgggctgcaccctgacctgttcgttctgccacacgggcacgcaa
aaactggtgcgcaacctgaccgcgggcgagatcgtcggccagatcatgatcgcgcgcgac
gatctgggcgagtggcccctgccggggcggaaccccaagaacgagacccggcttttgtcc
aatatcgtcctgatggggatgggtgagccgctttacaatttcgaggcagtgcgcgacgcg
atgaagatcgccatggaccccgagggcatcagcctgagccgtcggcggatcacgctctcg
acctcgggcgtggtgcccgaaatcgcccggaccgccgaagagatcggctgcatgctggcg
gtgtcgttccatgcgaccacggacgaggtgcgcgacaagctggtcccgatcaacaagcgc
tggaacattgccaccctgctcgacgcgctgcgggactatcccaaggccagcaattccgag
cggatcacgttcgaatacgtcatgctcaagggcgtcaatgacagtgacgaggatgcgcgg
cggctggtcgagctgatcaagggcattccggccaagatcaacctgatcccgttcaacgag
tggcccggcgcgccttatgagcggtcctcgaacaaccgcatccgggcgtttgccgacatc
atctacaaggccgggtatgccagcccgatccgcacccctcggggcgaggatatcatggcc
gcctgcgggcagttgaaatccgcgaccgagcgcgcgcgcaagtcccgcgcgcagatcgcc
gccgaaaccgggctgggataa
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