Dinoroseobacter shibae: Dshi_3334
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Entry
Dshi_3334 CDS
T00612
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dshi_3334 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsh03019
]
Dshi_3334 (recQ)
03400 DNA repair and recombination proteins [BR:
dsh03400
]
Dshi_3334 (recQ)
Enzymes [BR:
dsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dshi_3334 (recQ)
Messenger RNA biogenesis [BR:
dsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dshi_3334 (recQ)
DNA repair and recombination proteins [BR:
dsh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Dshi_3334 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
ABV95067
RoseoBase:
Dshi_3334
UniProt:
A8LNH3
LinkDB
All DBs
Position
complement(3500340..3502379)
Genome browser
AA seq
679 aa
AA seq
DB search
MPSADTILSSVFGFSEFRPGQEEVVDAVCAGEDVLAIMPTGGGKSLCFQLPALAREGLTV
VISPLIALMRDQVRGLREAGVAAGALTSGNTPEETDAVFEALEDGSLKILYMAPERLAHG
GTVRLLSRAGVGLLAVDEAHCVSQWGHDFRPDYLRIGDLRRALDVPVAAFTATADAETRD
EIIARLFPDTAPRVFLRGFDRPNIHLAFAAKDSPRRQILDFAGARKGQSGIVYCGTRAKT
EGLAQALREAGHMACHYHGGMEAEDRRIVETRFQREDSLIVVATVAFGMGVDKPDIRWVA
HADLPKSIEAYYQEIGRAGRDGAPAETLTLFGPDDIRLRRSQIDEGLAPPERKGADHGRL
NALLGLAEALRCRRQVLLSYFGEDSAACGNCDLCDTAPEVFDGTDAVRKALSAVLRTGES
FGAGHLIDILTGNATDKVRQRGHEDLPTFGVGRDLDKRTWQGVFRQMMGHDLLRPDAARH
GALVMTDAARPLLRGETTIELRRDTLRKAAHRPAVRALVSDEDAPLLSALKAKRRALAEA
AGVPAYVIFTDRSLIEMAERRPDTLDAFAGISGVGAKKLEKYGAAFLEVIAGDRPTPAHP
ARRKLAGRAAGSTYDRLLEAQAALLRGAAGTDKPLSCSAAILSRVAETRPRDEDDMVRIL
GDRRAERFGAAFLEVLREA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgccctccgccgacacgatcctgtcgtcagtcttcggattctccgaattccgccccggc
caggaagaagtggtcgatgccgtttgcgcgggcgaagacgtgttggcgatcatgcccacg
ggcggcggcaaatcgctctgcttccagttgcctgcgctggcccgcgaggggctgaccgtg
gtgatctcgcctctgatcgccctgatgcgcgaccaggtaagggggttgcgcgaggcgggc
gtggccgcgggggcactgacctccggcaacacgcccgaagagaccgacgcggtgttcgaa
gccctcgaagacgggtcgctgaaaatcctctacatggcgcccgaacgcctcgcccatggc
ggcacggtccgcctgttgtcccgcgccggggtcggcctcctggcggtggacgaggcgcac
tgcgtcagccaatggggccatgacttccgccccgactacctgcgcatcggcgatctgcgc
cgggcgctcgacgtgccggtggccgcctttaccgccaccgccgatgccgaaacccgtgac
gagatcatcgcgcgcctcttccccgacacggccccgcgcgtgttcctgcgcgggttcgac
cgcccgaacatccacctcgccttcgcagccaaggacagcccccggcggcagatcctcgac
ttcgccggggcccgcaagggtcagtccggcatcgtctattgcggcacccgcgccaagacc
gagggcctcgcccaggccctccgcgaggccgggcacatggcctgccactaccacggcggg
atggaggccgaggaccgccgcatcgtcgagacccggtttcaacgcgaggacagtctcatt
gtcgtggccaccgtggccttcggcatgggcgtcgacaaacccgatatccgctgggtcgcc
cacgcggacctgcccaagagcatcgaggcctactaccaggagatcggccgcgcgggccgc
gacggggcgccggccgagaccctgacgctcttcggccccgacgacatccgtctgcgccgc
agccagatcgacgaaggcctcgccccgcccgagcgcaaaggtgccgatcacggccgtctc
aacgcgctgctgggtctggccgaggcgctgcgctgccgccgccaggtcctgctgtcctat
ttcggtgaggacagcgcagcatgcggaaactgcgatctctgcgacaccgcgcccgaggtg
ttcgacggcaccgatgcggtgcgcaaggcactctcggcggtgctgcgtacgggggaaagc
ttcggcgcggggcatctcatcgacatcctgaccgggaacgccaccgacaaggtccgccag
cgcgggcacgaagacctgccaaccttcggcgtgggccgcgatctggataaacgcacctgg
cagggtgtgttccggcaaatgatgggccatgacctcttgcgccccgatgctgcccgccac
ggcgcgctggtgatgaccgacgcggcccgcccgctcctgcgcggggaaaccacgatcgag
ttgcgccgtgacaccctgcgcaaggccgcccaccgccccgccgtccgtgcgctggtctcg
gacgaggacgcgccgctcctgtcggcgctcaaggccaagcgccgcgccctggccgaggcc
gccggggtccccgcctacgtgatcttcaccgaccgcagtctgatcgagatggccgaacgg
cgccccgacaccctcgatgccttcgcgggtatcagcggcgtgggggccaagaagctggaa
aaatacggcgcggcctttctcgaagtcatcgcgggcgaccgaccgaccccggcccatccc
gcgcgccgcaagctggccgggcgtgcggccggcagcacctatgaccgcctgctcgaagcc
caggccgccctgctgcgcggtgcggcaggcacggacaagccgctcagctgttccgcggcc
atcctgtcgcgggtggccgagacccggccgcgggatgaggatgatatggtccgcatcctg
ggcgaccgtcgcgcggaacggttcggcgcggcctttctcgaggtgctgcgcgaggcgtga
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