Dinoroseobacter shibae: Dshi_3349
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Entry
Dshi_3349 CDS
T00612
Symbol
ybbB
Name
(GenBank) tRNA 2-selenouridine synthase
KO
K06917
tRNA 2-selenouridine synthase [EC:
2.9.1.3
]
Organism
dsh
Dinoroseobacter shibae
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dsh03016
]
Dshi_3349 (ybbB)
Enzymes [BR:
dsh01000
]
2. Transferases
2.9 Transferring selenium-containing groups
2.9.1 Selenotransferases
2.9.1.3 tRNA 2-selenouridine synthase
Dshi_3349 (ybbB)
Transfer RNA biogenesis [BR:
dsh03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
Dshi_3349 (ybbB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhodanese
Y_phosphatase3
Motif
Other DBs
NCBI-ProteinID:
ABV95082
RoseoBase:
Dshi_3349
UniProt:
A8LNI8
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All DBs
Position
3517036..3518097
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AA seq
353 aa
AA seq
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MPIALSSLPELTDLPHDEIIDVRSPAEFAEDHLPGAVNLPVLSNAERAEVGTVYVQDSPF
KARKMGAALVARNAARHLETHLADKPGAYRPLVYCWRGGQRSGSFAAILQQIGWRAETLQ
GGYRSYRRLVNAALYDAEFPCPVVLLDGDTGSGKTDILNLLPGLGWQVLDLEGMAHHRGS
LLGAYAEDQPAQKGFESALAMALAALDPARPVVVEAESSKIGRINLPPVLWSAMRRAPRL
VLSVPRAERARYLTRSYGDLLDQPGEMAARLNPLRKLHGHAQVDAWQEMAAAGAFEALAE
GLMAVHYDPLYRRGRKGAEGQDLALGNGALAQERMAETAALVSQALAAVVAAR
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcgccctgtcgtccctgcccgaactgaccgacctgccccatgacgaaatcatc
gacgtccggtccccggcggagtttgccgaggaccatctgccgggtgcggtcaacctgccg
gttctgtcgaacgcggagcgggccgaggtcggcacggtctatgtacaggacagccccttc
aaggcgcgcaagatgggcgcggccctcgttgcgcggaacgcggcccggcatctggagacc
catctggccgacaagccgggcgcgtaccggccgctggtctattgctggcgcggggggcag
cggtccgggtccttcgcggcgatcctgcagcagatcggctggcgcgccgagaccttgcag
ggcggctatcggagctaccggcggctggtgaacgcggcgctctatgatgccgagtttccc
tgccccgttgtactgctggacggggataccggatcgggcaagaccgatatcctgaacctg
ctgcccggtctgggctggcaggtgctggacctcgaagggatggcgcatcatcgcggctct
cttctgggcgcatatgccgaagatcagcctgcacaaaagggattcgagagtgcgctggcg
atggcccttgcggcgctcgatccggcccggcccgtggtggtggaggccgagagctccaag
atcgggcggatcaatctgccccccgtcctgtggtccgcaatgcggcgggcacctcggctg
gtgctgtcggtgccgcgcgcggaacgggcccgctacctgacgcggagctacggcgacctg
ctggatcagccgggagaaatggccgcgcggctgaaccccttgcgcaaactgcacggccac
gcccaggtcgacgcctggcaggagatggccgcggcgggcgcattcgaggcgctggccgag
ggcctgatggcggtgcattacgatccgctctaccggcgcgggcgaaagggggccgagggg
caggacctggccttgggcaacggggcgctggcgcaagagcggatggcagagaccgccgcg
ctggtgtcgcaggcgctggcggcggttgtcgccgcgcgttga
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