Dinoroseobacter shibae: Dshi_3448
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Entry
Dshi_3448 CDS
T00612
Symbol
dnaQ1
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh03030
DNA replication
dsh03430
Mismatch repair
dsh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dshi_3448 (dnaQ1)
03430 Mismatch repair
Dshi_3448 (dnaQ1)
03440 Homologous recombination
Dshi_3448 (dnaQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dsh03032
]
Dshi_3448 (dnaQ1)
03400 DNA repair and recombination proteins [BR:
dsh03400
]
Dshi_3448 (dnaQ1)
Enzymes [BR:
dsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Dshi_3448 (dnaQ1)
DNA replication proteins [BR:
dsh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Dshi_3448 (dnaQ1)
DNA repair and recombination proteins [BR:
dsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Dshi_3448 (dnaQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ABV95181
RoseoBase:
Dshi_3448
UniProt:
A8LPB6
LinkDB
All DBs
Position
complement(3630667..3631359)
Genome browser
AA seq
230 aa
AA seq
DB search
MREIVLDTETTGFEPSEGDRLVEIGGVELFNHVPTGRVYHQYINPQRSMPQSAFEVHGLG
DDFLADKPLFAEVAEAFLDFIGDAKLVIHNAAFDMKFLNAELGWLGKPLLPMEQAIDTLA
IARRKFPGSPASLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIGGQQPGLELSSVQ
TPSTQNVDNGHLRARPRPAPLPSRVSEKEKAAHAAFVESLGQSALWRTVT
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgagatcgtgctcgacacggagacgaccggattcgagccttcggaaggcgatcgg
ttggttgaaatcggcggagtggagcttttcaaccatgtgcctacgggccgggtctatcac
cagtacataaacccccaacggagcatgccccaatccgcctttgaagtgcatgggcttggt
gacgactttcttgcggacaagccgctctttgccgaggttgccgaggccttcctggatttc
atcggggatgcgaaactggtcattcacaacgccgcgttcgacatgaagtttctgaacgca
gagctgggttggctgggcaaaccgcttctgccgatggaacaagcgattgatacattggct
atcgcaaggcgaaagtttccgggatcgcctgcatctctcgacgcattgtgccgtcggttt
ggtgtcgacaactcggcacgtgagaaacacggggcgctgctggattccgagatcctggcc
gaagtgtacctggagctcatcggcgggcagcaaccggggctggagctgtcgagtgtacag
accccgtccacacaaaatgtggataacgggcatctccgtgcccgccctcggcccgcgccc
ttgccgtcccgggtgtcggaaaaggaaaaggcggcacatgccgcctttgtcgaatctctt
gggcagtccgcgctttggcgcacggtgacctga
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