Dinoroseobacter shibae: Dshi_4080
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Entry
Dshi_4080 CDS
T00612
Symbol
thiC
Name
(GenBank) thiamine biosynthesis protein ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh00730
Thiamine metabolism
dsh01100
Metabolic pathways
dsh01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
Dshi_4080 (thiC)
Enzymes [BR:
dsh01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
Dshi_4080 (thiC)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
ABV95802
RoseoBase:
Dshi_4080
UniProt:
A8LT47
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All DBs
Position
pDSHI04:complement(13911..15719)
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AA seq
602 aa
AA seq
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MKDLTPTVTTGPLPASRRVYQPGTLHPQIRVPMREIDLHPSAGEPPVTVYDSSGPYTDPS
AKIAINGGLPRLRADWIAARNDIELYEGRHVRPEDNGFAEGARLVPEFPVRHKPLQAKAG
RAVTQMAYARAGIITPEMEFVAIRENLGRKAAKEALVRDGQDWGAAIPDFVTPDFVREEV
ARGRAIIPANINHPEAEPMGIGRNFLVKINANIGNSAVTSSMEEEVEKMVWATRWGADTV
MDLSTGRNIHNIRDWIIRNSAVPIGTVPLYQALEKVEGIAEDLSWEVYRDTLIEQAEQGV
DYFTIHAGVRLHMIPMTIKRVTGIVSRGGSIMAKWCLHHHRESFLYEHFAEICEIARAYD
VSFSLGDGLRPGSIADANDEAQFAELETLGELTQIAWKHDCQVMIEGPGHVAMHKIKENM
DKQLEVCGEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGTAMLCYVTPKEHLGLPNR
DDVKIGVITYKIAAHAADLAKGHPGAQIRDDALSRARFEFRWEDQFNLSLDPETARSMHD
ETLPKEAHKVAHFCSMCGPKFCSMRISHDIRAEAQKDGMAKMAEKFRKGGDLYVPLDKVK
EI
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatctgacaccaaccgttactactggacccttaccggcatcccggcgcgtttat
cagcccggaacgctgcatccccaaattcgcgtccctatgcgcgagattgatcttcaccct
tcggctggcgaaccgccggttacggtctatgacagctctggcccctatactgatcccagc
gctaaaatcgctatcaacggtggcctgccgcgcctgcgggcagactggatcgccgcacgc
aacgatatcgagctttatgagggtcgccatgtgcgtcccgaggataatggctttgctgag
ggtgcccggctggtgcccgaattcccggtccgccacaagccgttgcaagccaaggcagga
cgcgcggtcacgcagatggcctatgcccgcgccgggattataacacccgagatggaattt
gtcgccatccgcgagaaccttggccgtaaggccgcgaaagaggctctggtacgtgacggc
caggattggggcgcggccatccccgattttgtgactcccgatttcgtgcgcgaagaagtc
gccaggggccgtgcgatcatccccgccaatatcaaccaccccgaggccgagccgatgggg
atcgggcgtaattttctggtcaagattaacgcgaatatcggtaactccgccgtcacctcc
tcgatggaggaagaggtggaaaagatggtctgggccacacgttggggcgcggatacggtg
atggacttgtctacgggccgcaatattcacaacatccgcgactggatcatccgcaattct
gccgtacccatcggcaccgttccgctttatcaggcgctggaaaaggtcgagggtatcgcc
gaagacctaagctgggaggtgtaccgcgatacgctgatcgaacaggctgaacagggggtg
gattacttcaccattcatgctggcgtgcggctgcatatgatcccgatgacgataaagcgg
gtgaccgggattgtatcgcgcggcggctcgatcatggcgaaatggtgcctgcatcatcac
cgcgaaagtttcctttacgagcacttcgctgagatctgcgaaattgcccgggcatatgac
gtcagcttctctttgggggatgggttgcgtcccggctctatcgcggacgccaatgatgag
gcgcaattcgccgaactggagacgttgggcgaactgacgcagatcgcatggaagcatgac
tgtcaggtgatgatcgaaggaccgggccatgtagccatgcacaaaatcaaggagaatatg
gacaagcagctggaggtctgcggcgaggcgccgttttatacgctcgggccgcttaccacg
gatatcgcaccgggatatgaccacattaccagcggtattggtgcggcgatgataggctgg
ttcggcacggcgatgctttgctatgtcactcccaaagagcatctaggtctgcctaaccgt
gacgatgtgaagatcggtgtcatcacctacaagattgcggctcatgctgccgatctggcc
aaggggcatccgggagcgcagatccgagatgacgcgttgtcacgcgcgcggttcgagttc
cgctgggaggatcagttcaacctctcgcttgatcccgaaaccgcgcgctcgatgcatgac
gaaaccttgccgaaagaggcgcataaggtcgcgcatttctgctccatgtgcggaccgaag
ttctgctcgatgcggatcagccacgatatccgcgccgaggcgcagaaggacggcatggcg
aaaatggccgagaagttccgcaaaggcggtgatctttatgttcctcttgataaggtaaag
gaaatataa
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