Dinoroseobacter shibae: Dshi_4156
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Entry
Dshi_4156 CDS
T00612
Name
(GenBank) acetoin catabolism regulatory protein
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
dsh
Dinoroseobacter shibae
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dsh03000
]
Dshi_4156
Transcription factors [BR:
dsh03000
]
Prokaryotic type
Helix-turn-helix
Other families
Dshi_4156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
GAF
HTH_8
HTH_30
HTH_23
HTH_AsnC-type
HTH_1
HTH_24
HTH_29
HTH_28
HTH_50
HTH_3
Sigma70_r4
AAA_16
HTH_psq
Motif
Other DBs
NCBI-ProteinID:
ABV95866
RoseoBase:
Dshi_4156
UniProt:
A8LUE9
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All DBs
Position
pDSHI05:1936..3684
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AA seq
582 aa
AA seq
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MGDLAHVTEIDRVVSGRAQGSLRDAVVTESWRRCVESYGLNPTATDAPHIVTDAELRAHR
EQAERLIAVARSGLQGLFKQVAGHNYVLLLADAQGVCVDFFGDPRFEDELRSAGLYLGSN
WQEELAGTCGVGSCIVTGEAVTIHQDDHFGLAHTPLSCTAAPIYDSLGQLSAVLDISLLR
SPTPKSSQNLAMSLVKASARRVEMANLMATARQDWVLRFSTSPEFLEVDPEAAVSLDGAG
RITGLTHAAQAALGATDPGALLGTRIDALMEMSIDDLPDLMRGRPTEERVLRLRDGRGVF
GHAIAPQAPRTPRPAAVPEMPAPLAGFAGPDPVLTPLLRRLGQLAGTEVPLLLLGETGTG
KERLARAVHLSGPAGRGFTVLRCAGLGRDPLPEPPAGTLFLRGVEDLDTAGQGAVLALLE
ARPDLRAIASARTDISAAVKAGAFRSDLFFRLAGHVAHLPPLRLRHDLEWLLTRLMRRHV
ARDLSLSPAARAELSARNWPGNIRELQSTLDVAAALAEGRVIDLPDLPGPSLPEAAAAPP
EADLQSLLDACGWNMSQAARRLGVNRSTVLRRVRKAGLTPPS
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgggggaccttgcccatgtgacggagatcgaccgggttgtcagcggccgcgcgcagggg
tcgctgcgcgatgcggtggtcaccgaaagctggcggcgctgcgtcgagtcctacgggttg
aacccgaccgccaccgacgccccccatatcgtcaccgacgcggagttgcgtgcccatcgc
gagcaggccgagcggctgatcgccgtggcccggtccgggcttcaggggctgttcaagcag
gtggcggggcataactacgtgctgcttctggccgatgcgcagggggtgtgcgtcgatttc
ttcggcgatccgcgtttcgaggacgagctgcggagcgccggtctctatctcgggtcgaac
tggcaggaggagctggcgggcacctgcggcgtcgggtcgtgcattgtcaccggggaggcg
gtgacgatccaccaggacgaccatttcggcctcgcccacaccccgctgagctgtaccgca
gcacccatctacgactcgctggggcagctgtcggcggttctcgacatctcgctgctgcgt
tcgcccaccccgaaatcgagccagaacctggccatgagcctggtcaaggcctcggcccgg
cgggtggagatggccaacctgatggccacggcgcggcaggactgggtgctgcgattctcg
acctcgccggaattcctggaggtcgatccggaggcggcggtgagcctcgatggcgcgggg
cggatcaccgggctgacccatgccgcgcaggcagcactcggggcgacggatccgggcgca
ctgctgggcacgcggatcgacgcgctgatggagatgtcgatcgacgatcttccggacctg
atgcgcgggcggcccacggaggagcgggtgctgcgcctgcgtgacgggcgcggggtgttc
ggccatgccatcgccccgcaagccccccggaccccccgcccggcggcggtgcccgagatg
cccgcgccgctggcggggttcgccgggccggatccggtgctgaccccgctgctgcggcgg
ttggggcaattggcgggcaccgaggtgccgctgctgctgctgggcgagaccggcaccggg
aaggagcggctggcccgcgccgtgcatctgagcgggcccgcggggcggggtttcacggtg
ctgcgctgcgccggtctggggcgcgatccgctgcccgagcccccggcggggaccctgttt
ctgcgcggggtcgaggatctggacaccgcggggcagggggcggttctggccctgctggag
gcgcgccccgacctgcgcgcgatcgcctcggcgcgcacggacatctcggcggcggtgaag
gccggggcgttccggtcggacctgttcttccgcctggcggggcatgtggcgcatctgccg
cccctgcggctgcggcacgatctggagtggctgctgacgcggttgatgcggcgccatgtg
gcgcgggatctcagcctgtcgcccgcggcgcgggccgagctgtcggcgcgcaactggccg
ggcaatatccgcgagctgcaatccacgctcgacgtggccgcggcccttgcggagggtcgg
gtgatcgacctgccggacctgcccggccccagcctgccggaggccgccgccgccccgccc
gaggccgatttgcagagcctgctcgatgcctgcggctggaacatgagccaggccgcaagg
cggctgggagtgaaccggtccaccgtgttgcggcgggtgcgcaaggccgggctgaccccg
ccgtcctga
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