Dyadobacter sandarakinus: HWI92_12470
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Entry
HWI92_12470 CDS
T07768
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dsn
Dyadobacter sandarakinus
Pathway
dsn03030
DNA replication
dsn03410
Base excision repair
dsn03420
Nucleotide excision repair
dsn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HWI92_12470 (ligA)
03410 Base excision repair
HWI92_12470 (ligA)
03420 Nucleotide excision repair
HWI92_12470 (ligA)
03430 Mismatch repair
HWI92_12470 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dsn03032
]
HWI92_12470 (ligA)
03400 DNA repair and recombination proteins [BR:
dsn03400
]
HWI92_12470 (ligA)
Enzymes [BR:
dsn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HWI92_12470 (ligA)
DNA replication proteins [BR:
dsn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HWI92_12470 (ligA)
DNA repair and recombination proteins [BR:
dsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HWI92_12470 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HWI92_12470 (ligA)
MMR (mismatch excision repair)
DNA ligase
HWI92_12470 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HWI92_12470 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
BRCT_2
Zn_ribbon_NUD
Zn_ribbon_6
HHH
DUF7575
Motif
Other DBs
NCBI-ProteinID:
QRR01662
LinkDB
All DBs
Position
complement(3100038..3102131)
Genome browser
AA seq
697 aa
AA seq
DB search
MDPQQQIIDLTRKLNHYNTRYYQDDVSEVSDFEFDQMLKQLKALEDQYPAFMQGDSPTQR
VGGTVTKTFSAVYHRYPMLSLDNTYNEQELRNFDDRVRKGLDGEAYEYICELKFDGISLS
FTYENGVLVRGVTRGDGTRGDDITTNIKTIRTLPLRVSGEALPPVFEVRGEGFMPISSFQ
KLNEEMESLGENLYANPRNAASGSFKLQDSAETARRALDCYLYSFITDNDFFKSHEESLL
SLKSWGFNVSPGWRKVQTIDEVIAFIHEWEEKRLSLPLATDGIVIKVNSFEQQRELGFTA
KSPRWAISYKYKAENKPAVLRFVTYQVGRIGTITPVANLSDLTERTLPYNQVKGVHLSGT
RVKRATLHNANELERLGIRLYDTVFVEKSGEIIPKITGVDVSQRESYETKPIVFPTHCPE
CGHELQRNEGEVAYFCPNDSHCPPQLKGRIEHFIHRKAMNIESLGEGKIELLFDLGLVKT
PADLYDLNESNLLGIEKSILNEETGKVKKISFREKTVENILKGIELSKTVPFKNVLFALG
IRFVGATVAEKLATYFKSIRALRAATYEQLTGVPEIGGRIAMSIESYFSVPENQLLVERL
EQAGLQMETNEKPVEKESEVLEGKTFVISGVFEHFERDDLKEKIEANGGRVLSGVSGKLN
YLLAGANMGPSKLEKARKLGVTILSEEEFLAMIANIS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggatccccaacagcagatcattgatcttacccggaaactcaaccattacaatacccgc
tactatcaggacgatgtttccgaagtgtcggattttgagtttgatcagatgctcaaacag
ctgaaagcgcttgaagatcagtatcctgcgttcatgcagggtgattcacccacacagcgc
gtcggtggcactgtgacgaagacattcagcgcggtataccatcgttatcccatgctttcg
ctggataatacttataatgagcaggagctgcgcaacttcgacgaccgggtgcgcaaggga
cttgatggtgaggcttacgaatacatttgcgagcttaaattcgatggtatttcactcagt
tttacctacgaaaacggcgtactggtgcgcggggtaacccggggcgacggtacccggggc
gacgatattaccaccaatattaaaaccatcaggacattgcctctccgggtaagcggagaa
gctttgccgccggtgtttgaggtcagaggggaaggttttatgccaatcagctcttttcag
aagctcaacgaggaaatggaatcgctgggagaaaatctctatgcgaacccccggaatgca
gcttcgggctcattcaagttacaggactctgccgaaactgcacgccgggcacttgactgc
tacctttattcttttatcaccgacaatgattttttcaaaagtcacgaggaaagcctgctc
agcctgaaatcctggggcttcaatgtatcgccgggttggcggaaagtgcagaccatcgac
gaagtaattgcatttattcacgagtgggaagaaaaacgcctgtcgctgccgcttgctacg
gatgggattgtgatcaaggtaaactcttttgagcagcagcgtgagctgggttttacggct
aagagtccgcgctgggccatttcatacaagtataaggccgaaaacaagccggctgtgctg
cggtttgtaacctaccaggtcgggcggatcgggacaattacgccggtagccaacctgagc
gacctcacggagcgtactctgccgtacaatcaggtgaaaggtgtgcatttgtcgggcacg
cgggtgaagcgcgctacgctgcacaatgccaatgagctcgaacgcctggggattcgtttg
tacgacaccgtttttgtagaaaaaagcggtgaaatcattccgaaaattacgggagtagac
gtttctcaacgtgaaagttatgagacgaagcctattgttttcccaacacattgccccgaa
tgcggccatgagctgcaaaggaacgaaggagaggtagcctatttttgtcccaacgacagc
cactgtcctccccagctcaaaggccggatcgagcattttatccatcgcaaagccatgaat
atcgagagtttgggcgaggggaaaatcgagctgctgtttgatctgggactggtaaaaacg
cccgcagacctgtatgatctcaatgaatcaaacttgctggggattgaaaaaagcatcctg
aatgaagaaaccgggaaggtcaagaagatcagcttccgcgaaaagaccgtggaaaacatc
ctgaaaggcatagagctgtccaaaacggttccgtttaagaatgtcctttttgcactgggc
atccggtttgtaggcgctacggtggctgaaaaactagccacctacttcaagtccatccgt
gcgctacgggcggctacctatgagcagcttaccggcgttcccgagattggcggccgcatt
gccatgagcattgaatcctatttcagtgtgcccgaaaaccagctgctggtggagcgcctc
gaacaggctggcctgcaaatggaaaccaatgaaaagccagtcgaaaaggaaagcgaggtg
ctggaagggaaaactttcgtgatttcaggcgtatttgagcatttcgaaagggacgatctg
aaagagaaaatcgaggcaaacggcggacgtgtactgagcggggtttcgggtaagctcaac
tacctgctggcgggtgccaacatgggcccgtccaaactggaaaaagccaggaagctgggc
gtgaccattctgagcgaggaagaatttttagcaatgattgccaacatttcatga
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