Dickeya solani IPO 2222: A4U42_04640
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Entry
A4U42_04640 CDS
T04410
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dso
Dickeya solani IPO 2222
Pathway
dso03030
DNA replication
dso03410
Base excision repair
dso03420
Nucleotide excision repair
dso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A4U42_04640 (ligA)
03410 Base excision repair
A4U42_04640 (ligA)
03420 Nucleotide excision repair
A4U42_04640 (ligA)
03430 Mismatch repair
A4U42_04640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dso03032
]
A4U42_04640 (ligA)
03400 DNA repair and recombination proteins [BR:
dso03400
]
A4U42_04640 (ligA)
Enzymes [BR:
dso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A4U42_04640 (ligA)
DNA replication proteins [BR:
dso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A4U42_04640 (ligA)
DNA repair and recombination proteins [BR:
dso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A4U42_04640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4U42_04640 (ligA)
MMR (mismatch excision repair)
DNA ligase
A4U42_04640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A4U42_04640 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
DZR_2
DUF4796_N
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ANE74667
LinkDB
All DBs
Position
complement(1092647..1094698)
Genome browser
AA seq
683 aa
AA seq
DB search
MLEKESKPADDISTVSVQIEALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKTLEQAH
PELVTPDSPTQRVGAAPLDAFDTIAHEVPMLSLDNVFDETSFLAFSKRINDRLKNDGELT
FCCELKLDGLAVSLLYENGLLVRAATRGDGATGENITANIRTVGAIPLRLRGDNIPERLE
VRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTFLCYGVGL
VEGGELPDTHRGLLTQFRDWGLPVSDRIRLCTGSEAVLDFYRQVEQERETLGFDIDGVVI
KVNELTLQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVA
GVVVSNATLHNADEIERLGIQIGDRVVVRRAGDVIPQIVSVVLSERPADVRPVVFPEQCP
VCGSELERVDGEVATRCTGGLFCGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVK
TPADLFRLSAGILTGLDRMGPKSAQNLVNALNKAKFTTFARFLYALGIRDVGEATAVSLA
SHFGTLEALQSADLEALQQVQDVGIVVATHVRNFLDEAHNQQVIQELISENIGIHWPAPV
VVDIEASDSPFAGKTVVLTGSLTLLSRDEAKDRLTAQGAKVSGSVSKKTDLVIAGEAAGS
KLTKAQELGIEVIDEAEMMRLLG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgttggaaaaagagtcgaagcctgccgacgatatctccaccgtgtcggtgcagattgaa
gcgctacgcgctcagctgcgctatcacgagtacaaatatcatgtcgaagatgcgccggaa
attcccgacgcggaatacgacaaactgatgaatgcactgaagacgctggagcaggcgcac
cctgaactggtgacgccggattcgccgacccagcgggtcggcgccgcgccgctggatgcg
tttgacacgatagcgcatgaagtgccgatgctgtcgctggataacgtcttcgacgagacg
agttttctggcgtttagtaagcgtatcaacgaccgcctgaaaaatgatggcgagttgacc
ttttgctgcgagctgaagctcgatgggctggcggttagcctgctgtatgaaaacggcctg
ttagtgcgcgcggcgacgcgtggcgatggcgccaccggcgagaatattaccgccaatatc
cgcaccgtcggcgcgatcccgttgcgtctgcgcggcgacaacatcccggaacggttggaa
gtgcgcggcgaagtgttcatgaaacacaaggggttcgaagcccttaacgaggaagcgcgg
cgcaccggtggtaaggtgttcgccaacccacggaatgccgcggccgggtcgctgcgtcaa
ctggacccgcgtatcaccgccacccgcccgttgaccttcctgtgctacggcgttgggctg
gtggaaggtggcgagctgccagacacccaccgcgggctgttgacgcaattccgtgactgg
gggttgccggttagcgaccgcattcgcctgtgcaccggcagcgaggcggtactggatttc
taccgtcaggtggaacaggagcgcgagacgctggggttcgatatcgatggcgtggtgatc
aaggtcaacgagctgacgttgcaggagcggctggggtttgtcgcccgagcgccgcgctgg
gcggtggcgttcaagttcccggcgcaggagcagttgacctggctgcgcgacgttgaattt
caggtgggccgcaccggcgcgattacgccggtggcgcggttggagccggtagccgtcgcc
ggggtggtggtcagcaacgccacgctacacaatgccgatgaaatcgagcggttggggatt
cagattggcgaccgggttgtagtaagacgcgccggtgatgttatcccacaaattgtcagc
gtggtgctgtccgagcgcccggcggatgtccgaccggtagtgttccctgaacagtgcccg
gtgtgtggttcagagttggagcgggtggacggcgaggtggcgacccgctgcaccggcggc
ctgttctgcggcgcgcagcgcaaagaggcgctgaagcacttcgtttcccgtcgcgcgctg
gatgtggaagggatgggcgataaaattatcgaccaactggtggagaaagagtacgtcaag
acgccggcggacctgtttcgcttgagcgccggtatccttaccggactcgaccgtatgggg
ccgaagtcggcgcagaatctggtgaatgcgctgaacaaagccaaattcaccacgtttgcc
cgtttcctgtatgcgttggggatccgtgacgtgggggaggcgaccgccgtcagtctggca
tcgcatttcggtacgctggaagcattgcagtccgccgatctggaagcgctgcagcaggtg
caggacgtcggcatcgtggtggcgacccatgtgcgcaattttctcgacgaagcacataac
cagcaggtgattcaggagttgatcagcgagaatattggcattcactggccggccccggtg
gtggtggatattgaggcttcggatagcccgttcgccggaaaaaccgtggtgttgaccggt
tcgctgacgctattgtcccgcgatgaagccaaagatcgcctcacggcgcagggtgcgaaa
gtcagtggcagcgtgtcgaagaaaaccgatctggtgatcgcgggcgaagcggccggctcc
aaactgaccaaagcgcaggaactgggcattgaggtcattgatgaagcggaaatgatgcgt
ctgctggggtga
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