Dickeya solani IPO 2222: A4U42_08595
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Entry
A4U42_08595 CDS
T04410
Symbol
ligB
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dso
Dickeya solani IPO 2222
Pathway
dso03030
DNA replication
dso03410
Base excision repair
dso03420
Nucleotide excision repair
dso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A4U42_08595 (ligB)
03410 Base excision repair
A4U42_08595 (ligB)
03420 Nucleotide excision repair
A4U42_08595 (ligB)
03430 Mismatch repair
A4U42_08595 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dso03032
]
A4U42_08595 (ligB)
03400 DNA repair and recombination proteins [BR:
dso03400
]
A4U42_08595 (ligB)
Enzymes [BR:
dso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A4U42_08595 (ligB)
DNA replication proteins [BR:
dso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A4U42_08595 (ligB)
DNA repair and recombination proteins [BR:
dso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A4U42_08595 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4U42_08595 (ligB)
MMR (mismatch excision repair)
DNA ligase
A4U42_08595 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A4U42_08595 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
HHH_2
RNA_ligase
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ANE75386
LinkDB
All DBs
Position
complement(2042802..2044484)
Genome browser
AA seq
560 aa
AA seq
DB search
MRYRYALAAVLFVVSGLADAASCPAWSSARAEQEITQLGQQLTQWDNAYYEQGQSPVDDQ
VYDQLRQTLATWQVCFQTDAGRFAISLPTTGKRPHPVAHTGLKKLSEPAELKQWIAQHHD
LWVQPKIDGVAVTLVYEQGTLFAAISRGNGRQGEDWTDKVRQMNTVPQQLSGMPGRQVFQ
GELYLQVAGHRQQQVGGINARAQVAGEMRRKQPSPLLSRIGVFIWAWPDGPADMPARLVK
LRALGFGLTADYTQSVSSLEAAAQWRERWYRAPLPFVTDGVVVRQAREPAGRYWQDTPAE
WAVAWKYPLVNRVTEVTGVDVEVGRTGRMTVVLQLQPVILDDKTVSRVNLGSVSRWRQWD
VLPGDRVSVSLAGLGIPRLDAVVWRGAVREAITVPTVSPFDVFSCLQWSLECQPQFLARL
VWMSGRNGLSLSGISEATWRRLTQRGALADVVSWLALEPAQLAAAGDFGEQQTERIHRQF
QQARRQPLRNWLLALGLPVPSRARHALDAASFEQLQQRSAAEWQQFSGIGVRRAQRIRDF
LHHPDIVRQLVWLNEHGVKS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgcgatatcgatacgcgctggctgcggtgctgtttgttgtgagcggactggccgatgcg
gcgtcttgcccggcatggtcgtcggcgcgggctgaacaggagatcacccaactggggcag
caactgacgcagtgggacaacgcttattacgagcagggccaaagcccggtggacgatcag
gtttacgatcaactgcgtcaaacgctggcgacctggcaagtctgttttcagacggatgcc
ggacgttttgcgatcagtctgccgaccaccggcaagcggccgcatccggtggcgcacacc
ggtctgaaaaagctgtcggagccggccgaactgaaacagtggatcgcgcaacatcatgat
ttgtgggtacagcccaagatcgatggcgtggcggtgacgctggtgtacgagcaagggacg
ctgtttgccgccatcagtcgcggcaatggtcgccagggcgaggactggaccgacaaagtg
cgtcagatgaatacggtgccacagcaactttccggcatgcctggccgtcaggtctttcag
ggagaattgtatttacaggtggcgggccaccgtcagcagcaggtcggcggcatcaacgcg
cgagcgcaggtggcgggtgaaatgcggcgaaaacagccttcgccgctgctgtcccgcatt
ggcgtatttatttgggcctggccggacggcccggcggacatgccggcgagactggtgaaa
ttacgggcgctggggtttgggctgacggcggattacacgcaatccgtttcctcgctggag
gcggcggcgcagtggcgtgaacgctggtatcgtgcgccactgccgtttgtgaccgatggt
gtggtcgtgcgtcaggcgcgagaacctgccgggcgttactggcaagacaccccggcggag
tgggcggtggcctggaaatacccattggtgaaccgggtgacggaagtcaccggtgtcgat
gttgaggtggggcgcaccggcagaatgaccgtggtgttgcaattgcagccggtaatactc
gatgacaaaaccgttagtcgggtcaatctcggttcggtatcccgatggcggcaatgggat
gtgctgccgggtgatcgggtcagcgtcagtctggctgggttggggattccccggctggac
gctgtggtctggcgcggcgcggttcgtgaagcgataaccgtcccgacagtgtcgcctttt
gatgttttcagttgtttgcaatggagcctggaatgccagccacagtttctggcccgactg
gtatggatgagcgggcgcaacgggttgtcgcttagcggcatcagtgaggccacctggcgg
cgtctgacacaacgcggcgcgctggccgatgtggtgtcctggctggcgcttgaaccggcg
cagctggcggcggccggtgatttcggcgaacaacagacggaacggattcatcgccagttt
cagcaggcgcgccgccagccgttgcgaaactggttactggcgttagggctgccggtgcca
tcccgcgcccggcacgcactggatgctgcatcgttcgagcaattgcagcagcgttctgcg
gcagaatggcagcagttttccggtattggcgttcgtcgggcgcagcgcattcgagacttt
ctgcaccaccccgatatcgtcaggcaactggtatggctcaatgaacacggcgtgaaatca
tga
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