Dipodomys spectabilis (banner-tailed kangaroo rat): 122098481
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Entry
122098481 CDS
T07891
Symbol
Kdm2b
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122098481 (Kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dsp03000
]
122098481 (Kdm2b)
04121 Ubiquitin system [BR:
dsp04121
]
122098481 (Kdm2b)
03036 Chromosome and associated proteins [BR:
dsp03036
]
122098481 (Kdm2b)
Enzymes [BR:
dsp01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
122098481 (Kdm2b)
Transcription factors [BR:
dsp03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
122098481 (Kdm2b)
Ubiquitin system [BR:
dsp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122098481 (Kdm2b)
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
122098481 (Kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
122098481 (Kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
122098481
NCBI-ProteinID:
XP_042524844
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MEAEKDSGRRLRPIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKD
FNYEYVQREALRVPLVFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRESMLI
DAPTKTSVDGFSSDSWVEMEEESCEQQPQEDEEEKEEEEGHGTDTASKPPADGPTSPTST
PSEDQENSGKKPKAPAMRFLKRTLSNESEDSTKSATMPIDYPKTPTGSPTTEVSAKWTHL
TEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHAEDDPSLAITGVPV
VSWPKKTPKNQNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGEC
HFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLME
CSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLP
GSLLKEQKMNRDHKEGQEPAKRRSECEEAPRRKSDEPPKKAPPDGVLRRKSDDVHLRRKR
KYEKPQELSGRKRASTLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKL
FRKKRRSWKNTEDRLALANKPPRRFKQEPEDDLPAAPPKARDSDHSRSSSPTAGPSTEGA
EGPEEKKKVKMRRKRRLPNKELSKELSKELNHEIQKTESSLAHENHQPIKSEPESENEEP
KRPPGLCERPHRFSKGLNGTPRELRHPLGPGLRSPPRVISRPPPSVSPPKCIQMERHVIR
PPPISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTR
IDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAV
SALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLD
ITDASLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQ
CLSFFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgtccgattgaccgccagagatacgac
gagaacgaagacttgtcggacgtggaggagattgtcagcgtccgtggcttcagcctggag
gagaagctccgcagccagctgtaccagggggacttcgtgcacgccatggagggcaaagat
ttcaactatgagtacgtacagagagaagctctcagggttcccctggtatttcgagaaaag
gatggactaggaattaagatgcctgaccctgattttacagtccgagatgtgaaactccta
gtggggagccggcgactggtggacgtgatggacgtgaacacccagaagggcacagagatg
agcatgtcccagtttgtgcgatactacgagacgcctgaggcgcagcgggataagctctac
aacgtcatcagcctggagttcagccacaccaagctggagcacctggtcaagcgtcccact
gtggtggatctggtagactgggtcgacaacatgtggccacagcacctgaaggagaagcag
acagaagcaacgaatgccattgcggagatgaagtaccccaaagtgaagaagtactgtctg
atgagcgtgaaaggttgcttcactgacttccacatcgactttggaggcacttccgtgtgg
taccatgttttccggggtggaaagatcttttggctgatccccccaaccctgcacaatttg
gccctgtacgaggagtgggtgctgtcaggcaagcagagtgacatcttcctgggagaccgt
gtggaaagatgccaaagaattgagctgaaacagggctacacgtttttcatcccgtccggt
tggatccacgcagtctacacccctgtagactctctggtgttcggcgggaacatcctgcac
agcttcaacgtgcccatgcagctgcggatctacgagatcgaagacagaacccgggtccag
cccaagttccgttaccccttctactatgagatgtgctggtatgtcttggagagatatgtg
tactgcgtgacccagcgctcctacctcactcaggagtaccagcgagaatccatgcttatt
gatgccccaacaaagaccagtgtagacggcttctcttctgattcctgggtggagatggag
gaggagtcctgtgagcagcagccccaggaggacgaggaggagaaagaggaggaggaagga
catggtacagatacagcatccaagccacctgctgatggtcccacctcacccaccagcacc
ccttctgaggatcaggagaactcagggaagaagcccaaagcacctgccatgcgattcctc
aagaggacgctgtcaaatgagtctgaggacagcacaaagtctgcgacgatgcccatagac
taccccaagacacccactggctcacccactactgaagtgtctgccaaatggacacacctc
actgagtttgaactgaagggcttgaaggccctagtggagaaacttgagtccctcccagag
aacaagaagtgtgtccccgagggcatcgaggacccccaggcactcctggagggcgtgaag
aatgtcctgaaggagcatgcagaagatgaccccagtctggccatcactggcgtccctgtg
gtcagctggccaaagaagactccaaagaaccagaaccgggcagtgggtcggcccaagggc
aagctgggcccagcctccgcggtgaaattggccgccaaccgtaccacggcaggagctcgc
cggcgccggacgcgatgccgcaagtgcgaggcctgcctgcggaccgagtgtggagagtgc
cacttctgcaaggacatgaagaagttcggaggccccgggcggatgaagcagagctgcatc
atgcggcagtgcatcgcgccagtgctgccgcacactgccgtgtgccttgtgtgtggcgag
gcggggaaggaggacacggtggaggaggaggagggcaagtttaacctcatgctcatggag
tgctctatctgcaacgaaatcatccaccccggatgccttaagattaaggagtcggaggga
gtggtcaacgacgagcttcccaactgctgggagtgccccaagtgcaaccacgccggcaag
accgggaaagcctacaagcaaaagcgtggccctggttttaagtatgcctccaacctgccc
ggctccctgctcaaggagcagaagatgaaccgggaccacaaggaagggcaggagcctgcc
aagcggaggagtgagtgcgaggaggcgcccaggcgcaaatcagatgagccccccaagaag
gcgcccccagacggcgtcctgcgccgaaagtctgatgatgtgcacctgcggaggaagcgg
aagtacgagaagccccaagagctgagtggacgcaagcgcgcctcgacgcttcaaacgtcc
cccggttcctcctctcacctctcgccgaggccccccctcggcagcagcctcagcccctgg
tggagatccagtctcacttacttccagcagcagctaaaacccggcaaagaagacaagctt
ttcaggaaaaagcgacggtcgtggaagaacacagaggaccggctggccctggccaacaag
cccccacggcgcttcaaacaggagcccgaggacgacctgcccgcggcgccccccaaggcc
cgggacagcgaccactcgcgctccagctccccgaccgcggggcccagcaccgagggggcc
gaaggccccgaggagaaaaagaaggtgaagatgcgccggaaacggcggcttcccaacaag
gagctgagcaaggagctgagcaaggagctgaaccacgagattcagaagacagagagcagc
ctggcccacgagaaccaccagcccatcaagtcggagcccgagagtgagaatgaggagccc
aagcggccccctggcctctgtgagcgcccccaccgcttcagcaaagggctcaacggcacc
ccccgggagctgcggcaccccctggggcccggcctgcgcagcccgcccagggtcatctcc
cggcccccgccctcggtttctccacccaagtgcatccaaatggagcgccatgtgatccgg
ccgccccccatcagtcccccacccgattcgctgcccctggatgacggggcggcccacgtc
atgcacagggaggtgtggatggccgtcttcagctacctcagccaccaggacctgtgtgtg
tgcatgcgggtctgcaggacctggaaccgctggtgctgcgataagcggttgtggacccgt
atcgacctgaaccactgcaagtccatcacgcctctgatgctcagcggcatcatccggcgg
cagcccgtttccctcgacctcagctggaccaatatctccaagaagcagctcagctggctc
atcaaccggctgcctgggcttcgagacttggtgctgtccggctgctcgtggattgctgtc
tcagccctctgtagctccagctgtccgttgctccggaccctggacgtccagtgggtggaa
ggtctaaaggacgcccagatgcgggacctcctgtccccgcccacagataacaggccgggt
cagatggacaatcggagcaagctgcgcaacatcgtggagctgcgtctggctggcctggac
atcacagacgcctccttacgactcatcatccgccacatgcccctgctctccaagctccac
ctcagctactgtaaccacgtcaccgaccaatccatcaacctgctcactgcagtcggcacc
accacccgagactccctgaccgagatcaacctctcagactgcaataaggtcactgaccag
tgcctgtccttcttcaaacgctgtggaaatatctgtcatattgacctgaggtactgcaag
caagtcaccaaggaaggctgtgagcagttcatagccgagatgtctgtgagtgtccaattt
gggcaagtggaagaaaaactcctacaaaaactaagttag
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integrated database retrieval system
