Dipodomys spectabilis (banner-tailed kangaroo rat): 122101901
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Entry
122101901 CDS
T07891
Symbol
Smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122101901 (Smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122101901 (Smg6)
03032 DNA replication proteins [BR:
dsp03032
]
122101901 (Smg6)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
122101901 (Smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
122101901 (Smg6)
DNA replication proteins [BR:
dsp03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
122101901 (Smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
PIN_9
Motif
Other DBs
NCBI-GeneID:
122101901
NCBI-ProteinID:
XP_042528326
LinkDB
All DBs
Position
Unknown
AA seq
1417 aa
AA seq
DB search
MAEGLERVRISASELRGILATLAPQAGSRENMKELKEPRQRKDNRRPDLEIYKPGLSRLR
NRPKIKEPSGSEEFKDEIANDRDSSVVGNGTQLIKDVCKEMDNEQQNEPVDPENNQAQET
FSRTAGQEDRSLKIIKRTKKPDLQIYQPGRRLQTITKESTGRVDEEEILSQVEQLRVEED
ECREKIVKEQVVNKLDKAETEKNQSNDRGRTTKGEKGKRIEKGEGMKKVNEDLAQGKPGS
AKRYSRSDKRRNRYRTCSTSSAGSNNSAEGPSLTDNGCRRRRQDRTKERPRLKKQISMSS
TDSLDEDKIDESYGLGSRRNSERKKHLERNWSGHGEGEQKSKDNRGTLRVTFDTETVNKD
SPVVRSSREDMDRAKPDKSLNNGGKGSEKQESKNPKQELRGRGRGILILPAHTALSVSSA
GSPESTPLGPRLLFGSSTKGSRSWGRGGTTRRLWDPNNPDQKPALKSQTPQLHFLDTDDE
VSPTSWGDSRQAQASYYKFQNSDNPYYYPRTPGPASQYPYTGYSPLQYPVGPTNGMYPGP
YYPGYPTPSGQYVCSPLPASTMSPEEIEQHVRNMQQQELHRLLRVADNQELQLSNLLSRD
RISTEGMEKMSQLRAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLLKDP
NIENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYAL
ISAQRCMICQGDIARYREQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRK
LDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFELSPDQWRKGKKST
FRHVGDDTTRLEIWIHPSHSRSSQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHGK
LFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSEE
CRSVIQEQAAALGLAMFSLLVRRCTCLLKESAKAQLSSPEGQDDQDDIKVSSFVPDLKEL
LPSVKVWSDWMLGYPDTWNPPPTALDLPSQVAVDVWATLADFCNILTAVNQSEVPLYKDP
DDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVTVLKYFLEALCGQE
EPLLAFKGGKYVSVAPVPDTMGKEMGSQEGKQLEDEEEDVVIEDFEEDSEAEGSGGEDDI
RELRAKKLALARKIAEQQRRQEKIQAVLEDQSQMRQMELEIRPLFLVPDTNGFIDHLASL
ARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLERRFESRD
SCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPTNKEEPIRL
LREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQVG
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggggttggagcgtgtgaggatctctgcgtcggagctgcgagggatcctggcc
actctggctccgcaggccgggagcagagaaaacatgaaggagttaaaggagcccagacag
cgcaaagataacaggcgcccagatctggaaatctataagcctggtctttctcgattaagg
aacagacctaaaatcaaggagccctctgggagtgaggaatttaaggatgaaattgctaat
gacagagattcttctgtggttggaaatggtacacagctcattaaagatgtctgcaaggaa
atggacaatgaacagcaaaatgagcctgtagacccagaaaataatcaggcacaggagact
ttttctcggactgctggacaagaggatcgaagtctaaaaatcatcaagagaacaaagaaa
ccagacctacagatctatcaacctggacggcggctgcagaccattaccaaagagtcaaca
ggccgggtggatgaggaagaaatccttagccaggtggaacaattgagagtagaggaagat
gagtgtagagaaaaaattgtaaaagagcaagttgtgaataagttagacaaagctgagaca
gaaaagaaccaaagtaatgacagaggaaggactacaaaaggagaaaaaggaaaaaggatt
gaaaaaggggaggggatgaagaaagtgaatgaggacctagctcaaggaaaacctggatct
gcaaagcgctactctcgctcagacaaacgaaggaaccgctaccgcacttgcagtaccagc
tcagctggtagcaacaacagtgctgagggacctagcctgacagataatggatgtcgccgc
cgacgtcaggatcggaccaaggaaaggcctcggctgaagaagcaaatatcaatgtcctca
actgactccttagatgaagataaaattgatgagtcctatggattagggtccaggaggaac
tcagaaaggaagaagcacttagaaagaaactggtctggccatggggagggtgaacagaaa
agcaaagataaccgaggcactcttcgtgtcacttttgatacagaaactgtgaacaaagat
tcccctgtggtgaggtcatctagggaggatatggatagagcaaagcctgacaaaagcttg
aacaatgggggcaaaggctctgagaagcaggaatctaaaaacccgaaacaagaacttcgg
ggtcgtggtcgtggcattctgattctgcctgcccatactgctctatctgtcagttcagca
ggttctccagaatccacacctttgggacctcgacttttgtttggatctagtactaagggt
tctcggagttggggccgtggaggtactacgcgacgactgtgggacccaaacaatcctgat
cagaaacctgctctaaagagccaaacacctcagcttcatttcttggacactgatgatgaa
gtcagtcctacatcttggggtgactcacgtcaggcccaagcatcttactataagtttcaa
aattctgacaacccctattattatcctcggacaccaggccctgcctcccaatatccctat
acaggatatagccctctacaatacccagtgggccctacaaatggtatgtacccagggcct
tactacccaggatatccaactccatcagggcaatatgtatgtagtcctcttcctgccagc
accatgagtcctgaggagatagagcagcatgtgaggaacatgcagcaacaggagctacat
aggcttctccgtgtggctgacaaccaggagctacaactgagcaacttgctttctagggac
cgcatcagtactgagggcatggagaagatgtctcaactcagagctgaactgctacagctg
tacgagcgctgtattctgttagatattgaattctctgataatcagaatgtggatcaaatc
ctatggaagaatgctttctaccaggtaattgagaagttcaggcagcttcttaaagatcca
aatattgagaatccagaacagattcggaacagactcttggagctcttggatgagggtagt
gatttctttgatagtttgcttcagaagctgcaggttacttacaagttcaaactggaggat
tacatggatggtcttgccattcgtagcaagccattacgcaagacagtaaaatatgctttg
atcagtgctcagcgatgtatgatttgtcaaggagatattgctaggtatcgggagcaagcc
aatgatacagcaaactatggaaaagcacgcagttggtacctgaaggcccagcacattgct
ccaaagaatgggcgtccctataaccagttggctttgctggcagtgtatacgaggaggaag
cttgatgctgtatattattatatgcgcagcttagctgccagcaaccctatcctgactgcc
aaggagagtctaatgagcttgtttgaagagaccaagcgaaaggcagaacagatggaaaag
aagcaacatgaagaatttgaactgagccctgatcagtggcggaaaggaaagaagtctact
ttccggcatgttggagatgacaccactcgtctggagatctggattcatccatcccattcc
cggtcttcccagggcactgagtctgggaaggattctgagcaggagaatgggcttggaagc
ctgagccctagtgatctgaacaaaaggttcatcctcagttttctacatgcccatgggaag
ctgtttacccggattgggatggagacattccctgcagtggccgagaaggttctcaaggag
ttccaggtattgctgcagcatagcccatctcctattggaagtacccgcatgctacagctt
atgaccatcaacatgtttgctgtacacaactcacagttgaaagactgcttctcagaggag
tgtcgttctgtgatccaggagcaagctgcagccctgggcctggccatgttttctctactg
gtacggcgctgcacctgcttacttaaggaatctgccaaagctcagctgtcctctcctgag
ggccaggatgaccaagatgacatcaaggtgtcttccttcgtcccagacctgaaagaactg
cttcccagtgtgaaagtctggtcagactggatgctcggctacccagacacctggaatcct
ccccccactgctctggatctaccctcacaggttgctgtggatgtgtgggcaacattggct
gatttctgcaacatattgacagcggtgaatcagtctgaagtgccactgtacaaggacccg
gatgatgacctcacccttcttatcctggaagaggatcggcttctctcgggctttgtcccc
ttgctggctgcccctcaggacccctgctacgtggagaaaacctcggataaggttattgca
gccgactgcaaaagggtcacagtgctgaagtattttctggaagccctttgtggacaagaa
gagcctctgctggcattcaagggtggaaaatatgtgtcagtggcaccagtcccagacacc
atgggaaaggaaatgggaagccaagagggaaaacaactggaagatgaggaggaggacgtg
gtgattgaagactttgaggaagattcagaagctgaaggcagtgggggcgaggatgacatc
agggaacttagggccaagaagctggctctagccaggaagatagcggagcaacagcgtcgc
caagagaagatccaggctgtgctggaggaccagagtcagatgagacagatggagctggag
atcagacccttgttcctcgtacctgacaccaacggcttcattgaccacctggccagtctg
gcacgactgttggagagcaggaagtacatcctggtggttcctctcattgtgatcaatgaa
ctggacggcctggccaaaggacaggagacagaccaccgggcagggggctatgcccgtgtg
gtacaagaaaaggcccggaagtctattgagttcctcgagcgaagatttgagagtcgggac
tcttgtctacgggccctgactagccgtggcaatgaacttgaatccatcgcctttcgcagt
gaagacatcactggccagctgggtaacaatgatgacttgatcctttcttgctgcctccac
tactgcaaagacaaggctaaggacttcatgcctaccaacaaagaagagccaatccgccta
ctacgggaggtggtgttactgactgatgaccggaacctgcgtgtgaaggctctgacgaga
aatgtgcctgtgcgggacatcccagccttccttacgtgggcccaggtgggctga
DBGET
integrated database retrieval system
