Dipodomys spectabilis (banner-tailed kangaroo rat): 122104441
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Entry
122104441 CDS
T07891
Symbol
Smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dsp03036
]
122104441 (Smchd1)
03400 DNA repair and recombination proteins [BR:
dsp03400
]
122104441 (Smchd1)
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
122104441 (Smchd1)
DNA repair and recombination proteins [BR:
dsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
122104441 (Smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
DUF3447
Motif
Other DBs
NCBI-GeneID:
122104441
NCBI-ProteinID:
XP_042531304
LinkDB
All DBs
Position
Unknown
AA seq
2003 aa
AA seq
DB search
MAAEGANGPSVEAGEDRGGDGCRTVYLFDRREKKSELGDRELQVEERADFAGFRASVCQT
IGISPEEKFVITTTSRKEITHDNFDDTVKDGITLYLLQSVTQLLPAATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSHNVGIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHNLIVEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIDISMFEKGKAPKIINLREIQDDMQTLYINTASDSFEFKAHVEGDGIV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILDKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTTKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDEVRT
VPIAKLDRTVAEKTVRKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVPFNI
PLEFQDEFGHPSQLVTNIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGSINSCQGKNFN
LKVVLPGLKEDSQILKIRLLPGPPHRLKVKPDSEFLVIENGTAFPFQVEVLDESENITTQ
AKLIVHCKFSGGPNLPVYVVDCSSSGTSILTGPVIQVQNIKKDQTLKARIEIPSCKDVLP
VEKTIKLLPSSHVAQLQIFSVEGQKAIQIKHQDEVNWIAGDTMHNLIFQMYDEGEREINI
TAALAEKIKVNWTPEINKENLLQGLLPDVQVPTSIKDKRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVMIITDQYGNQVPAFSPSSLSALSIAGVGLDS
SNLKTTLQENTQSISVRGIKFIPGPPGNKDLCFAWREFSDFIRVQLISGPPAKLTLIDWP
ELKEAIPVINGRELERPLAVQLCDQWDNPALVPNVKISLIKASSLKLTPSNQQHKTDEKG
RANFGVFLVFASRGEHTIQVKATYNKSTIEGPVIKLMVLPDPEKPIRLNVKYDKDASFLA
GDVFTDFMVSVISEDESTIKNINAARISMKMWKLTGNVNRPPANAETFSCNKIKDNDKEE
GCFYFRDKVIPNKVGTYCIQFAFMMDKANMLSSEQVIVDVLPNLPMKLVPEIQPATPAVS
NVRSIASRTLVRDLHLSITDNYGNHTGMNLVGTVVATIKGFNEEDIDIPLFIGKVRTLEF
PFVNGSAEITSLVLAENSPGKDSTEYIIIFEPRLSPLTRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQLSKSIVMYRSLFEASKQLLDEMKCQVEEAKLKESQLRNELKTYNIDIPTTQ
QVSYIEALLKRKIAEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHFRNGKLYFKP
SGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRREVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCRILGEQIDLLQQYRSAVCKLGSVN
QDLNGQLEYLHTPDMKKKKQELDEQEKSLKLIEQKLGMTSTRKCNDSLRHSPKVEMTECP
IPPKRMRRETTRQNRRPKGDLPN
NT seq
6012 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggagggcgccaacgggccttcggtggaggctggggaggaccgcggcggagac
ggctgcagaaccgtgtatttgtttgaccggcgggagaagaagtcggagctcggggaccgc
gagctgcaggtcgaggagcgcgcggacttcgcgggcttccgagcctcagtgtgtcagaca
attggcatttcacccgaagaaaagtttgttattacaactacaagtaggaaagaaattact
catgataattttgatgacactgttaaagatggaatcactttatacctgttgcagtcagtc
actcagttattaccagcagctacaaaagaacgaattgactttctacctcactatgacaca
cttgttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcccttgccattt
gctcttgcagaattaattgataattcattgtcggctacttctcataatgttggtattaga
agaatacagattaagttgctttttgatgaaacacaaggaaaacctgcagtggcggtgata
gataatggaagaggaatgacctccaaacagcttaacaactgggctgtgtacaggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcggccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttggtggcaaacaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaagatgttcat
gaacttgtgctctctaaagaagattttgagaagaaggaaaaaaataaggaggcaatatac
agtggatatattagaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacataatcttattgtagaggagaaggaaaaagatagttttactgctgtggtc
atcacaggggtacaaccagaacacatacagtacttgaaaaattatttccatctttggaca
cgacaattagcgcatatttatcattactatattcatggcccaaaaggaaatgaaaaacgt
acatcaaaagaagttggacctttcaacaatattgacattgatatttccatgtttgaaaaa
gggaaagcacctaagatcatcaacttaagagaaatacaggatgacatgcagacattgtat
ataaacacagcatctgatagttttgagttcaaggctcatgttgaaggagatggtatagtg
gaagggattatccgataccatccttttttatatgatagagaaacttatcctgatgatcca
tgctttccatcaaaactaaaagatgaagatgatgatgatgactgtttcatacttgataaa
gcagcaagagggaaaagaccaatttttgaatgcttttggaatggacgattaataccatat
acatcagttgaagactttgactggtgtactcctcctaagaagagagggcttgcaccaatt
gaatgctacaatagaatatctggtgcattattcactaatgacaaatttcaagttagtaca
aataaacttacatttatggatctggagctgaaattgaaagataagaacaccctttttaca
aggattttaaacggacaggaacagagaatgaaaattgacagagaatttgccttgtggctg
aaggactgtcatgaaaagtatgataaacagataaaatttacactttttaaaggaataatt
acccgtccagatcttccctctaaaaagcaaggcccctgggcaacatattcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacaaccaagacacttcctctt
ttttatggaagcatagtaagattttttctttatggtgatcatgatggagaagtatatgct
acaggaggagaagttcaaattgcaatggaacctcaggcactgtatgatgaagtaagaact
gtgccaattgcaaaactggataggacagttgctgagaaaactgttagaaaatatgtggaa
gatgaaatggcaaggctccctgatagattatcagtaacttggccggaaggagatgaatta
ttgcctaatgaaattaggcctgctggaacccccattggtgcattaagaattgaaatacta
aataaaaagggggaagcaatgcagaagcttccaggaacaagtcatggaggatcaaagaaa
ctcctggttgaacttaaggttatattgcactcttcaagtgggaataaagaaatcatttca
catattagtcaacacggaggaaaatggccttattggtttaaaaaaatggaaaatatccaa
aaattggggaattacacattgaaattacaagttgtattgaatgaaagcaatgcagacacc
tatgcaggaagaccactcccatctaaagccattaaattttctgttaaagagggcaagcca
gagaaattttcttttggtcttctggatcttccttttcgtgttggagttccattcaatatc
cctttggagtttcaggatgaatttggtcaccctagccaactagtaactaatattcagcca
gttcttgaagcaagtggtttatctttacattatgaagaaataaccaaaggaccaaattgt
gtaattcgaggtgttacagctaagggctctataaactcttgtcaaggcaagaattttaac
ttgaaggtggttctgccaggtttaaaagaagactctcagattttgaaaattagactacta
cctggtccccctcatcgattaaaagttaaacctgattctgaatttttggttatagaaaat
gggacagctttcccatttcaggtggaagttttagatgaatcagaaaacataacaacacaa
gcaaaactgattgttcattgcaagttttcaggtggtccaaaccttccagtttatgttgtg
gattgtagtagttctggaactagtattttaacaggacctgtaattcaagttcagaatatt
aaaaaagaccagacacttaaagcaaggattgaaatacctagttgtaaagatgtgttacca
gtagaaaaaactattaaattgcttcctagtagccacgttgcacaactacagatattcagt
gtagagggacaaaaggcaatccaaatcaaacatcaggatgaggttaattggatagcaggt
gatactatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaataaatata
acagcggctttagcagaaaaaattaaggttaattggactcctgagattaacaaagaaaac
ttactacagggtctacttcctgatgtacaagtaccaacgtctataaaagataaacgctac
tgccaagtctcattccaagatgatcatgtatctttggaaagtgcatttacagtaagacca
cttcctgatgaaccaaaacatctaaaatgtgagttaaagggaggaaaaacagtgcagatg
ggccaggagcttcaaggagaaatagttatgatcatcacagatcagtatggaaatcaggta
ccggcattttcaccaagttccttatctgccttatcgattgctggggttggacttgatagc
tcaaatttgaaaactactttgcaggaaaacacacaaagtataagtgtaagaggcataaag
tttattccaggccctcctggaaataaggatctttgttttgcatggcgtgagttttctgac
tttattcgagtgcagctaatttctggacctcctgctaaacttaccctgatagactggcca
gaattaaaagaggccattccagtgattaatggaagagagttagagcgtcctcttgctgtt
caactttgtgatcagtgggacaatccagcactagtaccaaatgtaaaaataagtctcata
aaagccagcagtttaaagctcacaccttcaaaccagcaacataaaacagatgaaaaaggc
agggctaattttggagtgttccttgttttcgcttctaggggagaacatactatccaggtt
aaagccacctataacaagagtaccatagaaggacctgtaattaagttaatggttcttcca
gaccctgaaaaacccattcgtctcaacgttaaatatgacaaagatgcttctttcttagca
ggggatgttttcactgattttatggttagtgttatttctgaagatgaaagtaccataaaa
aatattaatgctgcacgtatttccatgaaaatgtggaaactgactggcaatgtgaatcga
ccacctgcaaatgcagaaacatttagttgtaataaaataaaagataatgacaaggaagaa
ggctgcttctatttcagggataaagtaattcctaacaaagtgggaacatattgtatccag
tttgcttttatgatggataaagcaaatatgctcagcagtgaacaggttatagttgatgtc
ctaccgaatctgcctatgaagttggttcctgaaatccagccagctactcctgctgtttct
aatgttcgttctattgccagtaggaccttggtcagagacttgcatctcagtattacggat
aattatggcaatcatactggaatgaatctggttggcactgtagtagctaccattaaaggt
tttaatgaggaggatatagacatcccactcttcattgggaaagttagaacacttgagttt
ccttttgtgaatggttcagctgaaatcacaagtctagtgctggcagaaaatagtcctgga
aaggatagtactgaatatattattatttttgagcctcggttatcacctttaacaagaaca
ttagagccatatatactaccatttatgttttataacgatgttaagaagcagcaacaaatg
gcagcacttacaaaagaaaaggaccagttatctaaatctattgttatgtatagaagtcta
tttgaagcaagcaaacagcttcttgatgaaatgaaatgccaagtggaagaagcaaaatta
aaggagtcccagttgcgaaatgagttgaaaacatataatattgatattcctacaacacaa
caggtgtcatacattgaagcacttttgaaaagaaagatagcagaacaggaagaactaaag
aaaaaacccagaagatcatgtacacttccaaattatactaaaggcagtggagatgttttg
ggaaagattgcacatcttgcacaaattgaagatgacagagctgcaatggttatttcctgg
catctggcaagtgacatggactgtgtggtcaccctaaccaccgatgctgcacgtcgaata
tatgatgaaacccagggtcgtcaacaggtgttaccccttgattctatttataagaagact
ctgccagattggaaaagacctctccctcatttccgaaatggaaaattatattttaaaccc
agtggagatccagtctttgctcgagacttgttaacatttccagataatgtagaacattgt
gaaacagtatttggtatgctgttaggagacaccattattttggataacctggatgcagcc
aatcattacagaagagaggttgttaaaatcactcattgccccacactgctgaccagagat
ggagatagaattcgaagtaatgggaagtttgggggccttcagaataaagctcctccaatg
gataaacttcgaggaatggtatttggagctccaataccaaaacagtgcaggattttagga
gaacaaattgatcttcttcaacaatatcgctcagctgtatgcaagctgggtagtgtgaat
caggaccttaatggtcaattagagtaccttcacactcctgatatgaagaagaaaaagcaa
gaacttgacgaacaagaaaaaagtttgaaactcatagagcaaaaacttggtatgacttct
acacgtaagtgtaatgattctttgcgtcattcaccaaaagttgagatgactgaatgccca
attcctcctaaaagaatgagaagagaaactacaagacaaaatagaagaccaaaaggtgac
ttacccaactga
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