Dipodomys spectabilis (banner-tailed kangaroo rat): 122109123
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Entry
122109123 CDS
T07891
Symbol
Setdb1
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1 isoform X1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp00310
Lysine degradation
dsp01100
Metabolic pathways
dsp04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
122109123 (Setdb1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
122109123 (Setdb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dsp03036
]
122109123 (Setdb1)
Enzymes [BR:
dsp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
122109123 (Setdb1)
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
122109123 (Setdb1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
122109123 (Setdb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5604
Tudor_4
Tudor_5
MBD
SET
Pre-SET
Chromo_MORC2_6th
DUF4537
Chromo
Motif
Other DBs
NCBI-GeneID:
122109123
NCBI-ProteinID:
XP_042537228
LinkDB
All DBs
Position
Unknown
AA seq
1318 aa
AA seq
DB search
MSSLPGCIGLGAARAAMESEEIAELQQTVVQELGISMEELRQFIDEELEKMDCVQQRKKQ
LAELETWVIQKETEVAHVDQLFDDASRAVTNCESLVKDFYSNLGLEYHDSSSEDESSQPT
EIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQGL
HKGTLSPMSGELSKDGDLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKS
LLSGNHIAYDYHPPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDG
YASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEG
TWWKSRVEEVDGSLVKILFLDDKRCEWIYRGSTRLEPMFSMKTSSASALEKKQGGQLRTR
PNMGAVRSKGPVVQYTQDLTSTGTQFKPMEPPQPIAPPVPPAPSALPAPPLSPQAGDNES
LESQLAQSRKQVAKKSTSCRPGSVGSGHSSPTSPPLNENASGGKPGINQTYRSPLGSTTS
APALSAPQLPPVSDELPIVSTTSAPAPPAPSGPPAPPAFHGMLERAPAEPSYRAPMEKLF
YLPHVCSYTCLSRIRPMRNEQYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCG
LCLRTMQEIERYLFETGCDFLFLEMFCLDPYVLVDRKFQPYKPFYYILDITYGKEDVPLS
CVNEIDTTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTIQATA
CTPGGQINPNSGYQYKRLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQN
KGWGIRCLDDIARGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYES
DIPCSSDSSGVDMKDQEDGNSGTEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTR
GQKENGPTETASKDSRPPDLGPPHIPIPPSVSVGGCNPPSSEETPKNKVASWLSCNSVSE
GGFADSDSRSSFKTSEVGEGRSGGGRGEAEKISTSVLGMKDEGDIKQAKKEDPDDRNKVS
VVTESSRNYGYNPHVKPEGLRRPSSKTNMHQSRRLMASAHANPDDVLTLSSSTESEGESG
TSRKPTAGQTSNAAVDSDDIQTISSGSEGEDFEDKKNMSGPTKRQVAVKSTRGFALKSTH
GIAIKSTNMASVDKGESAPVRKNTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQ
NVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccctccctgggtgcattggtttgggtgcagcaagagctgcaatggagtctgaa
gagattgcagagctgcagcagacagtggttcaggagctgggtatctctatggaggaactt
cggcagttcattgatgaagaacttgaaaagatggactgtgtacagcaacgcaagaagcag
ctagcagagttggagacatgggtaatacagaaagaaactgaagtcgctcatgtggaccag
ctctttgatgatgcatcaagggcagtgactaattgtgaatctttggtgaaggacttttac
tctaatctgggacttgaataccatgacagtagctctgaggatgaatcttcccagcccaca
gaaataattgagattcctgatgaagatgatgatgtcttaagtattgattcaggtgatgct
gggagtagaactcccaaagaccagaagcttcgtgaagctatggctgccttgagaaaatca
gctcaagatgtccagaaattcatggatgctgtcaataagaagagcagttcccaaggtctg
cataaaggaactttgagtcccatgtctggagaactgagcaaagatggtgacctgatagtc
agtatgcggattttgggcaagaagagaaccaagacatggcacaaaggcacccttattgcc
atccagacagttgggccagggaagaaatacaaggtgaaatttgacaacaaagggaagagt
ctgctgtcagggaaccatattgcctatgattaccaccctcctgctgacaagctctatgtg
ggcagtcgcgtggtagccaagtacaaagatgggaatcaggtctggctttatgctggcatt
gtagctgagacaccaaacgtcaaaaacaagctcaggtttctcattttctttgatgatggc
tatgcatcctacgtcacacaatcagaactgtatccgatttgccggccattgaaaaagact
tgggaggacatagaagacatttcctgccgagacttcatagaagaatatattactgcctat
cccaaccgtcccatggtgctgctcaagagtggccagcttatcaagactgaatgggaaggc
acatggtggaagtcccgagttgaggaagtagatggcagcctagtcaagatcctcttcctg
gatgacaaaagatgtgagtggatctatcgaggttctacacggctagagccaatgttcagc
atgaaaacatcttcagcctctgcactggagaaaaaacaaggaggacagctcaggacacgt
ccaaatatgggtgctgtgaggagcaaaggtcctgttgtccaatacacccaggatctgact
agtactggaacccaattcaagccaatggagcctccacaacccatagctccacctgttcca
cctgctccatctgctttacctgctccacctctgtccccccaagcaggtgacaatgaaagc
ttggaaagccagcttgctcagtcacggaagcaggtggccaaaaagagcacatcatgtcga
ccaggatctgtgggctctggtcattcctctcctacatctcctccactcaatgaaaatgcc
tctggtgggaaacctgggattaaccagacatacagatcacctttggggtcaacaacctct
gcaccagcactctcggctcctcagttgcctccagtcagtgatgaattaccaatagtctca
acaacctctgctccagcacccccagctccttctgggcctccagccccaccagccttccat
ggcatgttggagcgggcccctgcagagccctcctaccgtgccccaatggagaagcttttc
tacttacctcatgtttgtagctatacttgtctgtctcggatcagacctatgaggaatgag
cagtaccgaggcaagaaccctctgttagttccactactgtatgacttccggaggatgacg
gctcgacgccgagtcaaccgcaagatgggctttcatgttatctataagacaccctgtggc
ctctgccttcggacaatgcaggagattgaacgatacctatttgaaactggctgtgacttc
cttttcctggagatgttttgtttggatccttatgttcttgtggacagaaagtttcaaccc
tataaaccgttttactatattttggatatcacctatggaaaagaagatgttcctctgtcc
tgtgttaatgaaattgacacaacccccccaccccaggtcgcctacagcaaagagcgaatc
cccggcaagggtgttttcattaatacaggccctgagtttctggttggctgtgactgcaag
gatgggtgtcgggacaagtcgaaatgtgcctgccatcaactcactattcaggctacggcc
tgtaccccagggggccaaatcaaccctaattctggctaccagtacaagagattagaagag
tgtctgcccacaggggtttatgagtgtaacaaacgctgcaaatgtgacccaaacatgtgc
acaaatcggttggtacagcatggactacaggttcgactacagctatttaagacacaaaac
aagggctggggtatccgctgtttggatgacattgccagaggctcttttgtctgtatttat
gcaggcaaaatcctgacagatgactttgcagacaaggaaggcctggaaatgggtgatgag
tactttgcaaatctggatcatattgagagtgtagagaacttcaaagaaggatatgaaagc
gatataccctgttcctctgacagcagtggtgttgacatgaaggaccaggaagatggcaat
agtggtacagaggaccccgaagagtccaatgatgatagctcagatgataacttctgtaag
gatgaggacttcagcaccagctcagtgtggcgtagctatgctacccggaggcagacccga
ggccaaaaagagaatggacccactgaaacagcttccaaggactcacgccccccagacctt
ggacccccacatattcctatccctccttcagtctctgtagggggctgcaatccaccttcc
tctgaagagacacccaagaataaggtggcctcgtggttgagctgcaatagtgtcagtgaa
ggtggctttgctgactctgatagtcgttcatcctttaagactagtgaagttggggagggt
cggagtggaggaggccgaggggaggctgagaagatctccacttcagtactgggcatgaaa
gatgaaggagacatcaagcaggccaaaaaagaggatcctgatgatcgaaacaaggtgtca
gtagttactgaaagttctcggaattatggttataatcctcatgtgaagccagaaggactt
cgccgtccatctagtaagactaatatgcatcagagtcggcgactcatggcctctgcccat
gccaaccctgatgatgtcctgacactctccagcagcacagaaagtgagggggaaagtggc
acaagccgcaagcccactgcagggcagacttcaaacgcagcagttgacagtgatgatatc
caaaccatctcctctggctcagaaggggaggactttgaggacaagaagaacatgtctggt
ccaacaaagcgccaggtggcagttaaatcaacccgaggcttcgctcttaaatcaacccat
gggattgccattaagtcaaccaacatggcctctgtggacaagggagagagtgcacctgtt
cgaaagaacacacgccaattctatgatggtgaagagtcttgctacatcattgatgccaag
ctggaaggcaacctgggtcgctacctcaatcacagttgcagtcccaacctgtttgtccag
aatgtctttgtggatacccacgatcttcgcttcccctgggtggccttctttgccagcaag
agaatccgagctgggacagaacttacttgggactacaactatgaagtgggtagtgtggaa
ggcaaggagctgctctgctgctgtggagccattgaatgcagaggccggcttctttag
DBGET
integrated database retrieval system
