Dipodomys spectabilis (banner-tailed kangaroo rat): 122123200
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Entry
122123200 CDS
T07891
Symbol
Ddx58
Name
(RefSeq) antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04064
NF-kappa B signaling pathway
dsp04622
RIG-I-like receptor signaling pathway
dsp04623
Cytosolic DNA-sensing pathway
dsp05160
Hepatitis C
dsp05161
Hepatitis B
dsp05162
Measles
dsp05164
Influenza A
dsp05168
Herpes simplex virus 1 infection
dsp05169
Epstein-Barr virus infection
dsp05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
122123200 (Ddx58)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122123200 (Ddx58)
04623 Cytosolic DNA-sensing pathway
122123200 (Ddx58)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
122123200 (Ddx58)
05160 Hepatitis C
122123200 (Ddx58)
05171 Coronavirus disease - COVID-19
122123200 (Ddx58)
05164 Influenza A
122123200 (Ddx58)
05162 Measles
122123200 (Ddx58)
05168 Herpes simplex virus 1 infection
122123200 (Ddx58)
05169 Epstein-Barr virus infection
122123200 (Ddx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
dsp04054
]
122123200 (Ddx58)
Enzymes [BR:
dsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122123200 (Ddx58)
Pattern recognition receptors [BR:
dsp04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
122123200 (Ddx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_22
VPS11_C
AAA_25
Motif
Other DBs
NCBI-GeneID:
122123200
NCBI-ProteinID:
XP_042553543
LinkDB
All DBs
Position
Unknown
AA seq
922 aa
AA seq
DB search
MTAEQRRNLRAFHDYVRKTLDPTYILAYMAPWLGEDQMQYIQAQKDSKGPMEAASLFLEF
LLNLKEEGWFRGFLDALFQAGYSGLYEAIETWDFQKIEKLEEHRSLLRRLQPEFKDRIIP
TDILSDMSECLISQECEEIKQICSNKGMMAGAEKMVECLIRSDKENWPKILKLALEKEEN
TFSQLWCVGEGQKDVEDDRIEASSIQIFFREDPDCLNLSQNSCPPSDMTHTNLNSPLKTR
NYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKQFPEGQKGKVAFFANQVPVYL
QQKSVFSMYFERLGYKVAGISGATAESVPVQQTIENNDIIILTPQILVNSLKQGSILSVS
VFTLMIFDECHNTSKHHPYNMIMFSYLDQKLGGGPSNPLPQVVGLTASVGVGDATTVEEA
MLYICRLCAALDASVIATVRENVEELEEVVYKPQKFFRKVESRTTDKFKFIISQLIKETE
CLAKNVSEQLGHLFEIQNREIGTQKYEQWIVGVHKECMVFQMADKEEESRICKALFLYTS
HLRRYNDALIISEHAQMKDALNYLKDFFNNVRSAGFDEIEQDLTRRFEEKVPELECISLD
PSNENPKLKDLYLILQEEYHVNPETKTILFVKTRALVDALKNWIEENSALNFLKPGILTG
RGRTGEVTGMTLPAQKCVLDAFRTNSNNNILIVTSVADEGIDIAQCNLIILYEYVGNVIK
MIQTRGRGRARGSKCFLLTSNADVIEKEQMNMYKEKMMNESISRLQAWDVAQFEKTVHRI
QIDEKFSRDSQQKPKPAPVKENKKLLCGKCKGLACYTAEVRVIEDCHYTVVGNAFKERFV
IKPHPKPKTYGSFVKKAKIFCARPDCSHDWGIHVKYNAFEIPVIKIQSFVVEDVATRAQT
WFSRWKDFNYEWTQFAPAEMSI
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgactgcggagcagcggcgaaacctgcgggccttccacgactacgtccggaagactctg
gaccccacctacatcctggcctacatggccccctggctgggggaggatcagatgcagtat
attcaggctcagaaagacagtaaaggcccgatggaggctgcctcactttttctcgagttc
ctgttgaacctcaaggaagaaggctggtttcgtggatttttggatgctctattccaagca
ggttattctggactttatgaagccattgaaacttgggatttccaaaaaattgaaaagtta
gaggagcatagatctcttttaagacgtttacaacccgaatttaaggacagaattattcca
acagatatcctctctgatatgtcagaatgtttaattagtcaggaatgtgaagaaattaaa
cagatatgctccaataaaggaatgatggcaggtgcagagaaaatggttgaatgccttatc
agatcagataaagaaaactggcccaagattttgaaacttgctttggagaaagaagagaac
acatttagtcaactgtggtgtgttggggaaggtcagaaagatgttgaagatgacagaata
gaagcttccagcatacagattttcttccgggaggatccagactgcctgaatcttagtcag
aattcctgcccaccttcagatatgactcataccaacttgaacagcccattaaaaacacga
aattaccaactagagcttgctttgcctgctaagaaaggaaaaaatacaataatatgtgct
cctactggttgtggaaaaactttcgtttcacttcttatttgtgaacatcatctcaaacaa
tttccagaaggacaaaaagggaaagttgccttttttgctaatcaggttcctgtgtactta
cagcagaagtctgtgttctcaatgtattttgaaagacttgggtacaaagttgcaggcatt
tctggagcaacagctgagagcgtccctgtgcagcagacaattgagaacaatgacatcatc
attttaaccccacagatccttgtgaatagtcttaagcaaggaagtattctgtcagtgtct
gttttcactttgatgatatttgacgaatgccacaataccagtaaacaccacccatacaac
atgatcatgttcagctacctagatcagaaacttggaggaggaccttcaaatccactgccc
caggttgtggggctgacggcgtcagtgggtgtcggggatgccaccactgtggaggaagcc
atgttgtacatctgcagactgtgtgccgctctggatgcctctgtcattgccaccgtcaga
gagaacgtggaagaactggaggaagttgtgtacaaacctcagaaatttttcaggaaagta
gaatcacggactactgacaaatttaaattcattatatctcagctgataaaggagacagag
tgtctggcaaagaatgtctctgaacaacttggacacttatttgagatccaaaatagggaa
attggaacacagaaatacgaacagtggattgttggggttcataaagagtgcatggtattc
cagatggcagacaaagaggaagagagcaggatttgcaaagcactcttcctgtatacttca
catctgcggagatataatgatgctctcattatcagtgagcatgcacaaatgaaagatgct
ttgaattatctgaaagacttcttcaacaatgtccggtcagcaggatttgatgagattgag
caagatcttactcgaaggtttgaagaaaaggtgccagaactagaatgtatttctttggat
cctagcaatgagaaccctaaactcaaagacctctacttgatcctacaagaagaataccac
gtaaatccagagacaaaaaccattctctttgtgaaaacaagagcccttgtggatgcttta
aagaactggattgaagaaaattctgctctgaactttctaaaacctggcatattgacagga
cgtggtagaactggcgaagtaacaggaatgaccctccctgcacagaagtgtgtattggat
gcattcagaaccaacagcaataacaatattctgattgtgacctcggttgctgatgaaggc
attgacatcgcccagtgcaatctgatcatcttgtatgagtatgtgggcaacgtcatcaaa
atgatccaaaccagaggcagaggaagagcaagaggtagcaagtgcttccttttgacaagc
aatgctgatgtaattgaaaaagaacagatgaacatgtataaggaaaaaatgatgaatgaa
tccatttctagacttcaggcatgggatgtagcacagtttgagaaaacggttcaccggata
cagattgatgaaaaattcagcagagacagtcaacaaaaacccaaacctgctcctgttaag
gagaataagaaactgctgtgtggcaagtgcaagggcttggcgtgctacacggctgaggtc
cgagtgatcgaggattgccattacaccgtagttggaaatgccttcaaagagcgctttgtg
attaaaccacaccccaagcccaagacctatgggagttttgtgaagaaagcaaagatattc
tgtgccagaccagactgcagccatgactggggaatacacgtgaagtataatgcatttgag
attccggtcatcaaaatccagagttttgttgtagaggatgttgcaaccagagctcagaca
tggttctcaaggtggaaggactttaactatgagtggacacaatttgctcctgcagaaatg
tccatatga
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