KEGG   Dipodomys spectabilis (banner-tailed kangaroo rat): 122123553
Entry
122123553         CDS       T07891                                 
Name
(RefSeq) DNA dC->dU-editing enzyme APOBEC-3-like
  KO
K18750  C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
Organism
dsp  Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03250  Viral life cycle - HIV-1
dsp05170  Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:dsp00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    122123553
 09160 Human Diseases
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    122123553
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsp03019]
    122123553
Messenger RNA biogenesis [BR:dsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     122123553
SSDB
Motif
Pfam: NAD2 APOBEC2 NAD1 APOBEC_N SNAD4 APOBEC3 APOBEC_C APOBEC4_like APOBEC1 APOBEC4 dCMP_cyt_deam_1 Toxin-deaminase MafB19-deam N_NLPC_P60
Other DBs
NCBI-GeneID: 122123553
NCBI-ProteinID: XP_042553844
LinkDB
Position
Unknown
AA seq 401 aa
MQLQRQRPRAGLGPSCLGCLYPSTQIRDPMFTLSQGSFYFHFQNLLYANGRHTTFLCCRV
EREQEGLIITRVFKNQVGIHAELCFLHWFHDEEFFPGEDYQLTWYMSWSPCPNCAEQVAQ
FLAAHRNVSLTIFIARLYYHWLPQFQQGLRRLCQEGAQVEVMSYQEFEDCCEEFVKKSFR
PWKGLYTNYKQQEGTLRRILGSTVSLLKEETFLFQFNNRHRVPRHCGQHRPRRRTYLCYL
LARPGDTTAPTKGCLQNKKGHHAEIRFIERIRSMGLDPSQDYQITCYLTWSPCLDCAFKL
AKLKKDFPRLTLRIFTSRLYFHWIRKFQKGLHQLWLSGVLVAIMGLQEFTDCWNNFVNHQ
QRSFAPWEKLDAYSKNIRERLGRILRSWGCGPTPSSGGDSR
NT seq 1206 nt   +upstreamnt  +downstreamnt
atgcagctgcagcgccagagaccaagagccgggctgggaccctcctgcctgggatgtctg
tatccgtctacacagataagagaccccatgttcaccttaagtcaaggatcattctacttc
catttccaaaaccttctttacgccaacggccggcacacaaccttcctatgctgtcgagtg
gaaagagaacaggaaggcctgataatcacgagggtcttcaaaaaccaggtgggcatccac
gcggagctctgcttcctccattggttccatgacgaggagttcttccccggagaggactac
cagctcacctggtacatgtcgtggagcccctgccccaactgtgcggagcaggtggcccag
ttcctggcagcacaccgcaacgtgagcctgaccatcttcatcgcccggctctactaccac
tggctgccccagttccagcaggggctccgccggctgtgccaggagggggcccaggtggag
gtcatgtcctaccaagaatttgaagactgttgtgaagagtttgtgaagaagtccttcagg
ccgtggaaggggctgtatactaattataagcaacaggaaggcacactgaggaggattctc
ggaagcacggtgagtctgttaaaagaagaaaccttcctcttccagttcaacaaccggcac
cgggtgcccaggcactgcggccagcaccggccccgcaggaggacctacctgtgctacctg
ctggctcgccccggggacaccaccgcccccaccaaaggctgccttcaaaacaagaaaggt
caccacgcagaaatccgcttcattgagagaattcggtccatgggcctggaccccagccaa
gactaccagatcacctgttacctcacatggagcccctgcctggattgtgccttcaaactg
gctaagctcaaaaaagacttcccgcgcctgactctgaggatcttcacctcccgcctgtac
ttccactggatccggaagtttcagaaggggctgcatcagctgtggctgtcaggggtgctg
gtggcgatcatgggcctccaagagtttactgactgctggaacaactttgtgaaccaccag
caaagaagcttcgccccctgggagaaactggatgcgtacagcaagaacatacgagagagg
ctgggccggatcctgaggtcttggggctgtggacctacaccatcctcaggaggggattca
aggtga

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