Dipodomys spectabilis (banner-tailed kangaroo rat): 122127352
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Entry
122127352 CDS
T07891
Symbol
Agrn
Name
(RefSeq) agrin isoform X1
KO
K06254
agrin
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04512
ECM-receptor interaction
dsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122127352 (Agrn)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122127352 (Agrn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
dsp00535
]
122127352 (Agrn)
Proteoglycans [BR:
dsp00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122127352 (Agrn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
NtA
Kazal_CFAI
EGF_laminin
SEA
EGF
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
122127352
NCBI-ProteinID:
XP_042557904
LinkDB
All DBs
Position
Unknown
AA seq
2032 aa
AA seq
DB search
MVGPRASGPAPLRSLLLLPVVAALALPRAGGTCPERALERREEEANVVLTGTVEEILNVD
PVQHTYSCKVRVWRYLKGKDIVAQENLLDGGNKVVISGFGDPLICDNQVSTGDTRIFFVN
PAPPYLWPAHKNELMLNSSLMRITLRNLEEVEFCVEDKPGTHFTPVPPAPPDVCRGMLCG
FGAVCEPSEEDPGRASCVCKKSPCPLVVAPVCGSDASTYSNECELQRAQCRQQRRIRLLR
RGPCGSPDPCANVTCSFGGTCARSPDGRSASCVCPATCPGTPEGTVCGSDGVNYPSECQL
LRHACTRQEHIFRKFNGPCDPCQGVPADPSRLCRVDPHTRRPEMLLRPESCPSQQAPVCG
DDGVTYENDCVMDRTSAARGLLVQKVHSGRCQPRDQCVEACQFSAVCLSHRGRARCSCDR
VTCDGAYRPVCAQDGRTYDNDCWRRQAECRQQRAIPAKHRGPCAQAPSPCRGVQCAFGAT
CTVKNGEAVCECQRACSGVYDPVCGSDGVTYGSACELGAMACALGREIRVVRRGPCDRCG
QCRFGALCEVETGRCVCPSECVASAQPVCGSDGRTYASECELHVHACTHQIGLHVASAGH
CQTCGNTVCAFGAVCSSGQCVCPRCEHPPPGPVCGSDGVTYSSACELQEAACRQQMHIEE
ARPGPCEQPECGSGGSGSGEDGECELELCRQRGGVWDEDSEDGPCVCDFSCQGVLRSPVC
GSDGVTYGTECDLKKARCESQRELYVVGQGACRSTTLAPLLPEVLTHCTQTPYGCCQDNI
TAARGVGLAGCPGTCRCNPHGSYGATCDPASGQCSCRPGVGGLRCDRCEPGFWNFRGIVT
NGQSGCTPCSCDPRGAVRDDCEQMAGLCSCRPGVAGPKCGQCPDGHVLGPTGCEADSRAP
ETCVEMRCEFGASCVEEGGSAHCVCPVLACLDASATKVCGSDGVTYGNECQLKTIACRQR
LNISTQSLGPCQEAVPVAYPTSPGHVSSEASPPSPGTLPLAPSSSPQAWTPPAVASPPQP
TASLPRTTVWPMRTLPPTAPSTVSSLALSAFGESGSADGSGDEELSGDQEASGGGSGGLE
PPDSSREVTHGLPVERASCYNSPLGCCSDGQTPSLDAEGSNCPATKAFQGVLELEGVEGQ
ELFYTPEMADPKSELFGETARSIESALDDLFRNSDVKKDYRSVRLRDLGPGRSVRAMVDV
HFDPTTAYQAPDVGRALLRQIQASRRRALVVRKPLQEHVRFMDFDWFPAFVTGAATGATA
RAATVGRLPSSAVTPRAYPTHTSWPIGRTPAPPATRRPPTTAPSRGQTLRPGPHQLPLPC
DSQPCLYGGTCQDQDSGKGFACSCPAGRGGAVCEEALRSSVPAFGGHSFLAFPTLRAYHT
LRLSLEFRALEPQGLLLYNGNARGKDFLALALLGGHVQFRFDTGSGPAVLTSLVPVEPGQ
WHRLELSRHWRQGTLSVDGETPVVGESPSGTDGLNLDTDLFVGGIPEDQAAVVLERTSVG
VGLRGCIRLLDVNNQQLELGSWQGAARGSGVGECGDHACVPSPCHGGAPCRALGAGVFHC
QCPPGRFGPTCADEESPCQPNPCPGAMPCRVLPRGGAECECPPGREGALCQTVSERGSSS
RPFLADFSGFSYLELKGLHTFERDLGEKMELEVVFLARDPNGLLLYNGQKTDGKGDFVSL
ALRDGRLEFRYDLGKGAAVIRSKEPIALGAWTRASVERSGRKGALRVGDGPRVLGESPVP
HTMLNLKEPLYVGGAPDFSKLARAAAVSSGFNGAIQLLSLKGQQLLTQEHMLRAVDVSSF
ADHPCTQASGHPCLHGASCLPKGADYECLCPGGFSGRRCEKGLVEKSAGDLETLAFDGQT
YIEYLNAVTESRKALQSNHFELSLRTEATQGLVLWSGKATGPSDYVALAIVDGRLQLSYD
LGSQPVVLRSTVRVNTNRWLRVRAHREQREGSLQVGNEAPVTGSSPLGATQLDTDGTLWL
GGLQKLPVGQTLPKAYSTGFVGCLRDVVVGLRRLHLLEDAVTKPELQPCAAP
NT seq
6099 nt
NT seq
+upstream
nt +downstream
nt
atggtcggcccgcgggcgtccggcccggccccgctgcggtcgctgctgctgctcccggtg
gtggccgcgctcgccctgccccgcgccggcgggacgtgcccggagcgcgcgctggagcgg
cgcgaggaggaggcgaacgtggtgctcaccggcaccgtggaggagatcctcaacgtggac
ccggtgcagcacacctactcctgcaaggttcgggtctggcggtacttgaaaggcaaagat
atcgtggcccaagagaatctgctggacggtggcaacaaggtggtgatcagcggttttgga
gaccccctcatctgtgacaatcaagtgtccactggagacaccaggatcttttttgtgaac
cctgcacctccctacctgtggccagctcacaagaatgagctgatgctcaactccagcctc
atgcggatcactctacggaacttggaggaggtggagttctgtgtagaagacaaacccggg
acccacttcacaccagtgcctccagcacctcctgatgtgtgcaggggaatgctgtgtggc
tttggggccgtatgcgagcccagtgaggaagatccaggccgagcctcctgcgtgtgcaag
aagagtccctgccccctggtcgtggcacctgtgtgtggctccgacgcctcgacttacagc
aacgagtgtgagctgcagcgtgcgcagtgccggcagcagcggcgcatccgcctgctccgc
cgtgggccctgtgggtccccggatccctgtgccaatgtgacctgcagcttcggcggcacc
tgtgcacgctcaccggacgggcggagcgcctcgtgtgtgtgccccgcgacgtgtcccggg
actcccgagggcacggtgtgcggaagcgatggcgttaactaccccagtgagtgccagctg
ctacgccacgcctgcacccgccaggaacacatcttcaggaagttcaatggcccctgtgac
ccctgccagggcgtgccagccgacccaagccgcctctgccgtgtagaccctcacacacgg
cgcccggagatgctcctgcggccggagagctgcccttcccagcaggcgcctgtgtgtggg
gatgacggggtcacctacgaaaacgactgtgtcatggaccgcacctccgctgcccgaggc
ctgcttgtccagaaggtgcactccggccggtgccaacctcgagaccagtgtgtagaggcc
tgccagttcagtgccgtgtgcctgtcccaccgagggcgcgcccgttgctcctgcgaccgg
gtcacctgtgacggggcctatcggcctgtgtgcgcccaggacgggcgcacctacgacaat
gactgctggcgccggcaggccgagtgccggcagcagcgcgccatccccgccaagcaccgg
ggcccatgtgcccaggccccatccccgtgccgtggggtgcagtgtgcgttcggggcgacg
tgtacggtgaaaaacggggaagccgtgtgcgagtgccagcgggcgtgctcaggcgtctac
gaccctgtgtgtggcagtgacggcgtcacctacggcagcgcgtgcgagctgggggccatg
gcctgcgccctcgggcgggagatccgggtggtccgcagaggaccctgtgaccgatgtggg
cagtgccgctttggagccctctgtgaggtggagactgggcgctgtgtgtgcccctctgag
tgcgtggcctcggcccaacccgtgtgcggttcggacgggcgcacgtacgccagcgagtgt
gagctgcacgtccacgcctgtacacaccagatcggtctccacgtggcctctgccgggcac
tgccagacctgtggaaacaccgtgtgtgcctttggggcagtgtgctcctctggacagtgt
gtgtgtcctcggtgtgagcaccccccccctggacctgtgtgcggcagtgacggcgtcacc
tacagcagtgcgtgtgaactacaggaagccgcctgccggcagcagatgcacatcgaggag
gcccggccggggccgtgcgagcagccggagtgtggctccggaggctccggctcgggagag
gacggcgagtgtgagctggagctctgccggcagcgcggtggcgtctgggacgaggactcg
gaggatgggccctgcgtctgcgacttcagctgccagggtgtcctgaggagcccggtctgt
ggctcagatggtgttacctacggcacagagtgcgacctgaagaaggccaggtgtgagtca
cagcgagagctgtatgtggtcggacaaggggcctgccgcagtaccacattggccccactg
ctgcctgaggtcctaacacactgtacccagacaccatacggctgctgccaggataatatc
actgcagcccggggcgtgggcctggctggttgccccgggacttgtcggtgcaacccacat
ggctcctacggggccacctgtgacccggcctccggccagtgctcctgccggccaggtgtg
ggtggcctcagatgcgaccgatgtgagcctggcttctggaacttccgtggcattgtcacc
aatggccaaagcggctgtactccctgcagctgtgaccctcggggtgcggtgcgggatgac
tgtgagcagatggctgggctgtgctcctgtaggcctggtgtggctggtcccaagtgcggg
cagtgtccagacggtcacgtcctgggccccaccggctgtgaggcagattcccgggcacct
gagacctgtgtggagatgcgctgtgagtttggcgcctcctgtgtggaggagggcggctct
gctcactgtgtctgccccgtcctcgcttgcctggacgccagtgccaccaaggtctgtggg
tcagacggtgtcacgtacggcaatgagtgccagctgaagaccatcgcctgccgccagagg
ctgaacatctccacccagagcctgggcccgtgtcaggaagctgttcctgtggcttacccc
accagcccagggcacgtctcgagcgaggcctcgccaccttcacccggcaccctcccgctg
gctcccagtagcagcccccaggcgtggaccccccctgcggtggcatcgcccccgcagccc
acagccagcctccccaggaccactgtgtggcccatgcggaccctgccacccacagcaccc
tccaccgtgtccagtctcgccttgtctgccttcggtgaatccggcagtgccgatggcagt
ggtgatgaggagctgagcggggaccaggaggccagtgggggaggctctgggggcctcgag
cctcctgacagcagccgtgaggtaacccacgggctgcccgtcgaaagggcttcctgctac
aactcacctttgggctgctgctcggatggccagacaccctccctggacgcagagggctct
aactgtccggctaccaaggccttccagggagtgctggagctggagggggtcgaggggcag
gagctgttctacacgcctgagatggctgaccccaagtcagagctgtttggggagactgcc
aggagcattgagagcgcgctggacgacctgttccggaactcagatgtaaagaaggactac
cgaagtgtccgcctgagggacctggggcctggcagatctgtgcgcgccatggtggatgtg
cactttgaccccaccacagcctatcaggcgcccgatgtgggccgggccttgctccgacag
atccaggcgtccagacgccgggccctggtggtaaggaagcctcttcaggaacacgtgcgg
ttcatggacttcgactggtttcctgcgttcgtcacgggagctgcaacaggagccacagcc
agagcagctactgtgggccgactgccctcctcggccgtgaccccacgcgcctaccccact
cacactagctggcccatcggcaggaccccagcgccccctgccactcgacggccacccacc
actgcccccagccgtggccagactctgcgtccgggtccccaccagctgcccctcccctgt
gattcccagccctgcctctatggggggacctgccaggaccaggattctggcaagggcttt
gcctgcagctgccctgcaggcagaggaggcgctgtctgtgaggaggcgctccgttcctcc
gtgccagcctttgggggccactcctttcttgccttccctaccctgcgtgcctaccacacc
ctgcgcctgtcgctggaattccgggctttggagcctcagggacttctgctctacaatggc
aatgcacgcggcaaggacttcctggcactggcactgctgggtgggcatgtgcagttcagg
tttgatacgggttcagggccagcagtgctgaccagcctggtgccggtggagcccgggcag
tggcaccggctggagctgtcgcgacattggcgccagggcacgctctccgtggatggcgag
accccggttgtgggcgagagccccagtggcaccgatggccttaacctggacacggacctc
tttgtgggcggcatcccagaggaccaggctgccgtggtgcttgagaggacctcggttggt
gttggcctgaggggctgcatccgcctgctggacgtgaacaaccagcagctggagctcggc
agctggcagggggcggcccgaggctctggcgtgggcgaatgtggcgaccacgcctgtgtg
ccgagcccctgccatggtggggctccgtgccgggcgctgggagctggcgtgttccactgc
cagtgcccgcctggccgcttcggtcccacgtgtgcagatgaggagagcccctgccagcca
aacccctgcccgggggcaatgccctgccgcgtcctgcccaggggtggggccgagtgcgag
tgtcccccgggacgtgagggggccctctgccagacagtctcagagaggggttccagctct
cggcccttcctggctgacttcagtggcttctcctacctggaactgaaaggcttgcacacc
tttgaaagagacctgggggagaagatggaactggaggtggtgttcctggcccgtgacccc
aacggcctgctcctctacaatgggcagaagaccgatggcaagggggactttgtgtccctg
gcgctgcgcgatgggcgtctggagttccgctatgatctgggcaagggggctgcggtcatc
aggagcaaggagcccatagccctgggcgcctggaccagggcctccgtggagcgaagtggc
cgcaagggcgccctccgtgtgggcgacgggccccgcgtactgggggagtcgccagtgccg
cacaccatgcttaacctgaaggagccgctctatgtgggcggcgctccggacttcagcaag
ctggctcgggccgccgcagtgtcgtctggctttaacggcgccatccagctgctctccctc
aaaggccagcagctgctgacccaggagcacatgctgcgggcggtggatgtctcatccttt
gctgatcacccttgtacccaagcctcagggcacccctgcctccacggggcctcgtgtctc
ccaaagggagccgactatgaatgcctgtgtcctgggggcttctcagggcggcgctgtgag
aagggactggttgaaaaatcggcaggggacctggagacactggcctttgatggacagacc
tacattgagtacctcaatgcagtgaccgagagcagaaaggcgctccagagcaaccacttt
gagctgagcctgcgcaccgaggccactcaggggctggtcctgtggagcggcaaggccacg
gggccttcagactacgtggccctggccattgtggacggacgcctgcagttgagctacgac
ctgggctcccaacctgtggtgctgcgctccaccgtgagggtcaacaccaaccgctggctg
cgggtcagggctcacagggaacagagggaaggctcccttcaggtgggcaacgaggccccg
gtgacgggctcctcccctctgggagccacgcagctggatacggacgggaccctgtggctt
ggaggcttgcagaagctgcctgtgggccagaccctgcccaaggcctacagcacaggcttc
gtgggctgcctgcgggatgtcgtggtgggcctgcgccggcttcatctgctggaagatgcg
gtcaccaagccagaacttcagccctgcgctgccccctga
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