Dichomitus squalens: DICSQDRAFT_153372
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Entry
DICSQDRAFT_153372 CDS
T03133
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dsq
Dichomitus squalens
Pathway
dsq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DICSQDRAFT_153372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsq03400
]
DICSQDRAFT_153372
Enzymes [BR:
dsq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DICSQDRAFT_153372
DNA repair and recombination proteins [BR:
dsq03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
DICSQDRAFT_153372
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
Motif
Other DBs
NCBI-GeneID:
18837258
NCBI-ProteinID:
XP_007363117
JGI:
153372
LinkDB
All DBs
Position
Unknown
AA seq
1084 aa
AA seq
DB search
MTTPSGEAGIPLSFFVELVNAIAKIKPHRASEKQPPDTRYLDTPAYKTFKRWVAALYDRH
SPIPPDTTTIVFRFLFPEEDGRRKFGMQEAHLAQHLVRVLGVSSATDGRGERLKNWNDEG
AIGCLGDEVSAVMAATDHSQASTTAVSLNQIDALLTELASKCAFSDHSVRASFSVAAPGR
TREAILTSIYASLTPAEGAVVTQIILKDLRPLLYPLPLSATHYTAALLQYKSNAVTMLTK
EAAMHAWDRTGRMSLIFKSRANLEDAARTFESLKAGESLPAPAFGTPVQVGGVCIPKCVK
GQGAAQALRVMKGADKVWVESKYDGERAQIHVRVDEDGLPCIKIFSKSGRDSTLDRAGVH
GIICDALGLPRPSSMSAGGVRPSTGMEPSITKDVILEAEMVAFSETLGRIDEFWRIRSLI
ASTAIGVRHRTPLPVLSSTQDMMNSQQSLVSNGSDGGTRHLALVFFDILLLNGVSLLSIP
YAERRNILERTLHLSPGYAMFAERTCIDMRHTDAEEPLRRAFASLIADRQEGAVLKADAA
TYNERRWPWVKLKRDYISGHGDTVDLVLVGASWEKDRARELRVPPAAYTTFYFAALANAD
MISTDPSHKPCFEVIFNSSYGLSREGLEELNFMIKSSDPIPCRPQQAIEGLPYIYNLSPR
LSPPAVFLQRPLLAELFGAGFTKAQGNMFYELRFPRIFKIYRPSDRPWVDGTSLAEFQHI
AREVVGRDRPGKAEDDWVKRTFRPDEPTSPGVRCPRKRKQVETLWIEKLEVVDGKASGRG
SPTKRARIQGPAPTRKSAKTENVAQGQNAENLDRLGGAKGLSVRLGSSRLGSVTNVAASH
SPLRQTSGLTTSSPSPSPSPSPSPPSALEHNPAHQSAAYLPHPANGLKTPQSSPRQAVLQ
DPFPPSKQSHGVIQRMATEAISDDSPALPPSTSKPRSGKDGSQVVLSAIPSTLHQYLQDS
VVWMARPSGTPRPLWRAPSHAVIPTGSHVNTLDAVAVACGWVDVGPCHWARRGVIFIDDS
ECDQGCVPQVLAELAKRRAVLSDEDNAGNVRPILVFSTKMLAYDVLDRALTVEDLEARAI
CRFG
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgaccacacccagcggggaagcgggaatccccttatccttcttcgtcgagctagtgaac
gccatagcgaagataaagccgcacagggcgtcggagaagcagccaccggacacccgatac
ctcgatacaccagcatacaagactttcaagcgatgggtggcagctctgtatgaccggcat
tcgccaataccaccagatactaccacaatcgtgttccggttcctgttcccggaagaagac
ggccgtcggaaatttggcatgcaagaggctcatttggcccagcatcttgtcagagtactt
ggagtgtcaagcgctacggatggtaggggagaacggctcaagaactggaacgatgagggt
gctattggatgtcttggtgacgaggtttccgccgtcatggctgcgacggaccattcacaa
gcttccaccacagctgtctctctcaaccagattgatgcgcttctcaccgaactcgcatcc
aagtgcgctttctcggaccactctgtacgcgcctcattctccgtggctgcccccggacgg
acccgggaggctatcctgacctctatatatgcgtcgttgacgcctgcggagggtgcggtt
gtgactcagatcatcttgaaggaccttcgacctctgctctacccgttgcctctgtccgcc
acccactacacggctgcgttgctgcagtacaaaagtaatgcggtcacgatgctcaccaag
gaggccgctatgcacgcttgggatcgcactggccgcatgtcgctgatcttcaagagtcgg
gcgaacttggaggatgctgcgcggacgttcgagagcctcaaagccggcgagtcgctacct
gcgcccgcttttggaaccccagtccaggtcggtggtgtgtgcatccccaaatgtgtcaaa
ggccaaggcgcagctcaagcattgcgcgtcatgaagggcgcggataaggtctgggttgaa
tcgaagtatgacggagaacgcgcacagatccatgtacgagtcgatgaggacggtctgcct
tgcatcaagatttttagcaagagtggcagagactctactctcgaccgcgcaggtgtccat
gggatcatatgcgatgccctaggtctcccccgaccatcgagcatgtctgcgggcggagtc
aggccatccacgggaatggaaccttcaatcacgaaggacgtcatacttgaagctgagatg
gttgcgttctcggagacacttggtcgtatcgacgagttttggcgtatcagaagtcttatt
gctagcaccgccataggggtgcgtcataggacaccccttccagtgctttcttctactcag
gatatgatgaattctcaacagtcgctcgtctcaaatggctcggatggcggtacccgacac
ctcgccctggtcttcttcgatatactcttgctcaacggtgtctcgctcctttcaatcccc
tacgcggaaaggcgcaacatcctcgagcgaacgctacatctctcccccggatatgcaatg
tttgcggagagaacctgcatcgatatgagacacacagatgcggaggaaccgctcagaaga
gctttcgcgagcctcatcgctgaccgtcaggagggtgccgttctcaaagctgacgcagct
acatacaatgagagacggtggccttgggtcaagcttaagcgtgactacatcagcggtcat
ggtgataccgttgatctcgtcctcgttggtgcgtcttgggagaaagaccgagctcgggaa
ctgcgtgtgccacctgccgcgtacaccacgttctactttgcggcgctagcgaatgccgat
atgatcagcacggacccatcccacaagccttgtttcgaagtcatcttcaactcgtcatat
ggattgagccgcgaagggcttgaagagctcaattttatgatcaagagctctgatcctatt
ccgtgtcgacctcagcaagccatcgagggattgccatacatctataatctatcccctaga
ctctctcctcctgcagtcttcctccaacgaccgctcttagcggagctcttcggtgccggc
ttcacgaaagcacaaggcaatatgttctatgaactgcgcttcccccgcatatttaaaatc
taccgcccctccgaccggccatgggttgatggcacgagccttgccgagttccagcacatc
gctcgtgaagtcgtcggtcgcgatcgtccaggcaaggcggaggacgactgggtcaagagg
acgttccgtccagacgagccgacatccccgggcgtgcgctgcccgaggaagcgcaagcag
gtggagacgctatggatcgagaagctagaggtggtcgacggaaaggcgagtgggaggggt
agcccaacgaagagggcgcggattcaagggccagcgccgacgcgcaagtcagcaaaaacg
gagaatgtggctcaagggcagaacgcagagaacttggacaggcttgggggcgccaagggt
ctcagcgtgagactcggatcgtcccggctaggctccgtgaccaatgtagccgcgtcccat
tctcccctgcgacagacgtcggggctcacgacatcctcgccttcgccttcgccttcgcct
tcgccttcgcctccctccgccctggagcataaccccgcgcatcaatctgcagcgtatcta
ccacatccagcaaatggtctgaaaacaccccagtcttcccctcgtcaggcagtattacaa
gaccctttcccgccttcaaaacagtcacatggagtcattcagaggatggccacagaagca
atttcagatgattcccctgctctcccgccgtctacgtccaagccgcggtcggggaaggac
ggctctcaggtggttttatccgcgatcccctctacacttcatcagtacctacaagattcc
gttgtctggatggcgcgaccttctgggacccctcgcccactgtggagagccccgtcgcat
gcggttatacccaccggtagccatgtcaacacccttgacgcggttgccgttgcttgtggc
tgggttgatgtcggaccctgtcactgggcaaggcggggcgtcatcttcatcgacgattct
gaatgcgaccagggatgcgtacctcaggtactcgcggagcttgcgaagcgtagggcggta
ctgtcggacgaagacaacgcggggaacgtgcgacctattctcgtgttttccacgaagatg
ttagcctacgatgtgttggatcgagcgttgacggtggaggatctggaggctcgtgcaatc
tgtaggttcggttga
DBGET
integrated database retrieval system
