Demequina sediminis: GCM25873_01790
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Entry
GCM25873_01790 CDS
T09136
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dss
Demequina sediminis
Pathway
dss03030
DNA replication
dss03410
Base excision repair
dss03420
Nucleotide excision repair
dss03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GCM25873_01790
03410 Base excision repair
GCM25873_01790
03420 Nucleotide excision repair
GCM25873_01790
03430 Mismatch repair
GCM25873_01790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dss03032
]
GCM25873_01790
03400 DNA repair and recombination proteins [BR:
dss03400
]
GCM25873_01790
Enzymes [BR:
dss01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GCM25873_01790
DNA replication proteins [BR:
dss03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GCM25873_01790
DNA repair and recombination proteins [BR:
dss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GCM25873_01790
NER (nucleotide excision repair)
GGR (global genome repair) factors
GCM25873_01790
MMR (mismatch excision repair)
DNA ligase
GCM25873_01790
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GCM25873_01790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DNA_ligase_ZBD
Nlig-Ia
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BDZ60388
LinkDB
All DBs
Position
170675..172180
Genome browser
AA seq
501 aa
AA seq
DB search
MTDPRARHQELVQEIEAHRHAYYAEDAPTVSDAEYDALERELRELEALHPELATPESPTQ
TVGGTVALGFASVTHRERMMSLDNAFSLEDVEAWLARVEREAGPQPVVCEPKIDGLSISL
TYEHGELTRGVTRGDGTTGEDVTANVLTIAGLPRTLAGEHVPALVEVRGEVYLPVAAFEE
LNARLLEEGKAPYANPRNTAAGSLRQKDAAVTATRPLAVTTYALGALDWGDGAPDPRVGS
QHGIYAMLESWGLPVTAHARVVEGVDAVDAYLRELESGRHAMVHEIDGAVLKVDDRAVQG
QLGSTSRAPRWAIAYKFPPEEVHTTLEDIRVDVGRTGRVTPYGVMTPVTVAGSTVTYATL
HNAHEVARKGVRIGDTVVLRKAGDVIPEIVGPVVAARTGAEREWTMPTACPSCGTELVEQ
KEGDKDLRCPNAQFCPAQIVDRIAFIGSRGAFDVEVLGEKAAAALAESGVLENEAGLFDL
TQDDLRRVPLFVLEKDSKVGV
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaccctcgcgcccgccaccaggagctcgtccaggagatcgaggcgcatcgtcac
gcgtattacgcggaggatgcgcccacggtgtcggatgccgagtacgacgcccttgagcgc
gagttgcgcgagctcgaggcgcttcatcccgagctcgcgaccccggagagccccacgcag
accgtgggtggaacggtcgcgctcggtttcgcgtccgtcacgcatcgggagcgcatgatg
agcctcgacaacgcgttctccctcgaggacgtcgaggcgtggctcgcgcgtgtcgagcgc
gaggcggggccgcagcccgtcgtgtgcgagccgaagatcgacggcctgtcgatctccctc
acgtacgagcacggcgagctgacgcgcggcgtcacccgcggggacggcaccaccggggag
gacgtgaccgcgaacgtcctcacgattgcggggctgccgcgcaccctcgcgggcgagcac
gtgcccgcgctcgtcgaggtgcgcggcgaggtgtacctgcccgtcgcggcgttcgaggag
ctcaacgctcggctgctcgaggagggcaaggcgccgtacgcgaatccccgcaacacggcc
gcgggctcgctgcgtcagaaggacgccgcggtgacggcgacgcgtccgctcgccgtgacc
acgtacgcgctgggggcgctcgactggggcgacggtgctcccgacccgcgcgtgggatcg
cagcacggcatctacgcgatgctcgagtcgtggggcctgcccgtgaccgcgcacgcgcgt
gtggtcgagggtgtcgacgcggtcgacgcgtacctcagggaactcgagtccggtcgtcac
gcgatggtgcacgagatcgacggcgcggtgctcaaggtcgacgaccgcgcggtccaggga
cagctcggctcgacgagccgagcgccgcgctgggcgatcgcgtacaagttccctcccgag
gaggtgcacaccaccctcgaagacatccgcgtcgatgtcggacgcaccggtcgcgtgacg
ccctatggcgtgatgacacccgtgacggtcgccgggtccaccgtgacgtatgcgacgctc
cacaacgcccatgaggtcgcgcgcaagggcgtgcggatcggcgacaccgtggtgctgcgc
aaggcgggcgacgtcattcccgagatcgtgggccccgtggtcgcggcgcgcaccggagcc
gagcgcgagtggacgatgcccaccgcgtgcccgtcgtgcggcacggagctggtcgaacag
aaggaaggcgacaaggacctccgttgccccaacgcgcagttctgtcccgcgcagatcgtg
gatcgcatcgccttcatcggctcgcgcggggccttcgatgtcgaggtgctgggggagaag
gctgcggcggcgctcgccgagtccggcgtgctggagaacgaggccggactcttcgatctg
acccaggacgatctccggcgggtgccgctcttcgtgctcgagaaggactcgaaggtgggg
gtgtga
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