Desulfolutivibrio sulfoxidireducens: GD604_08780
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Entry
GD604_08780 CDS
T06821
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dsx
Desulfolutivibrio sulfoxidireducens
Pathway
dsx03030
DNA replication
dsx03410
Base excision repair
dsx03420
Nucleotide excision repair
dsx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dsx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GD604_08780 (ligA)
03410 Base excision repair
GD604_08780 (ligA)
03420 Nucleotide excision repair
GD604_08780 (ligA)
03430 Mismatch repair
GD604_08780 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dsx03032
]
GD604_08780 (ligA)
03400 DNA repair and recombination proteins [BR:
dsx03400
]
GD604_08780 (ligA)
Enzymes [BR:
dsx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GD604_08780 (ligA)
DNA replication proteins [BR:
dsx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GD604_08780 (ligA)
DNA repair and recombination proteins [BR:
dsx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GD604_08780 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GD604_08780 (ligA)
MMR (mismatch excision repair)
DNA ligase
GD604_08780 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GD604_08780 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QLA19824
LinkDB
All DBs
Position
1988414..1990510
Genome browser
AA seq
698 aa
AA seq
DB search
MADDFDPAIRARQLRDFIRHHDYRYYVLDDPEISDADYDALFRELAAIEASHPELDDSAS
PTKRVGGAPAEGFVSRPHRQRMYSLDNAMSREEWEAFLERARNALARQGGKLPGTFFVDP
KFDGLALEVIYENGRFVAALTRGDGVTGEDVTENLRTVRNLPLSLTPHAAAAGLPVPRLL
EVRGEVVITRQHFYELNEARRAAGEKIFANPRNAAAGSVRQLDPKVTAARPLRFFAYATG
AVDSPDSGPPWTTHAAMMRALGLYGFSVARQGRTCRTSEVYPFFQELGKMRLDLPFEIDG
AVVKCDDLAVQAELGFTDRAPRFAVALKFPAHEAETILRKIEVQVGRTRVITPVAILEPV
SLAGVTVSRATLHNEDEIAAKDLREGDTVVVRRAGDVIPEVVRAIEEKRPPEGRRPYIFP
PDCPSCHTPSVRLPGEAARRCVNPDCPGVRLRGIVYFVSKAGLDIEGVGGRWIEILVDRG
LLRSPADLFTLTREQLLELPRMKETLASKFVASIAKARDTATLERCIAALGIPLVGSRTA
RTLAGRYRDLGALSEAGEEELTELSDIGPEVARSIREFFTTPENQELLNRFREIGLWPRG
EPKKATTQAGHLAGKRFLFTGELPGMPRHEAQALLEAAGGIVVSAVSKKLDYLVAGDKPG
SKLQKARDLGVTVIGPGEFVDLLRPRRGGNVSVQASLF
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacgactttgatcccgcaatccgggcgcgccagcttcgcgacttcatccggcat
cacgactaccgctattacgtcctggacgatccggaaataagcgacgccgactacgacgcc
ctgtttcgcgaactggcggccatcgaggccagccatcccgaactggacgattccgcctcg
cccaccaaacgggtggggggcgcgccggccgagggctttgtctccaggccccaccgccag
cgcatgtacagcctggacaacgccatgagccgggaggaatgggaggcctttctggagcgg
gcgcgcaacgccctggccaggcagggggggaagctgcccgggaccttctttgtcgatccc
aaattcgacgggctggccctggaggtcatctatgaaaacgggcgcttcgtagcggccctc
acccggggtgacggcgtaaccggcgaggatgtgaccgaaaacctgcgcaccgtgcgcaat
ttgcccctgtcccttaccccccatgcggccgcggccggacttccggtcccgcgccttctg
gaggtgcgcggcgaggtggtcatcacccgccagcatttctatgagctcaatgaagcccgc
cgggccgccggggaaaagatcttcgccaaccccagaaacgccgcggccgggtccgtgcgc
caactcgatcccaaggttacggccgcccgtcccttgcgctttttcgcctatgccacggga
gccgtggactctccggattccgggccgccctggacaacccatgcggccatgatgcgcgcc
cttggtctgtacggcttttccgtggccagacagggccggacctgccggacctccgaggtc
tatccctttttccaggagcttgggaaaatgcgcctggatctgccgttcgagatcgacggg
gccgtggtcaagtgcgacgatctggcggtgcaggccgaactgggttttaccgaccgcgcc
ccgcgtttcgccgtggccctgaaatttccggcccatgaggccgagaccatcctgcgaaag
atcgaggtccaggtgggccgcacccgggtcatcaccccggtggccatcctcgaacccgtg
tccctggccggggtgaccgtgtcccgggccacgctgcacaacgaggacgagatcgcggcc
aaggacctgcgcgagggggacaccgtggtggtgcgccgggccggggacgtgatccccgag
gtggtccgggccattgaggaaaaacggccccccgaaggccgcaggccctatatcttccca
ccggactgcccatcctgccataccccgagcgtgaggctgccgggcgaagcggcccgcaga
tgcgtcaatcccgactgtcccggggtgcggcttcggggcatcgtctatttcgtgtccaag
gccggcctggacatcgagggtgtgggcggcaggtggatcgagatcctggtggatcgcggg
ctgttgcggtctccggccgacctgttcaccctgaccagggagcaattgctcgaactgccg
cgcatgaaggagacattggcctcgaagttcgtggcttccatcgccaaggccagggacacg
gccaccctggaaaggtgcatcgccgccctgggcattccgctggtgggatcgcgcacggcc
cgcaccctggccggccgctaccgggacctgggggcgctttccgaggccggggaggaggaa
ttgacggaactttcggacatcgggccggaggtggcccggtccatccgggagttcttcaca
acccccgaaaaccaggaactgctgaaccgtttccgggagatcgggttgtggccgagaggc
gagccgaaaaaggccacgacccaggccgggcatctggccggaaaacggttcctttttacc
ggggaactgccgggcatgccccggcacgaggcccaggcgctgcttgaggccgccggcggg
atcgtggtgtcggccgtctccaaaaagctcgattatctggtggccggcgacaagcccggc
tccaagctgcaaaaggccagggacctgggggtaacggtcatcggccccggggaatttgtg
gacctgctgcgtccccgccggggagggaacgtctcggtccaggccagccttttttga
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