KEGG   Dyella terrae: DYST_00402
Entry
DYST_00402        CDS       T08348                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
dta  Dyella terrae
Pathway
dta03030  DNA replication
dta03410  Base excision repair
dta03420  Nucleotide excision repair
dta03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dta00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DYST_00402
   03410 Base excision repair
    DYST_00402
   03420 Nucleotide excision repair
    DYST_00402
   03430 Mismatch repair
    DYST_00402
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dta03032]
    DYST_00402
   03400 DNA repair and recombination proteins [BR:dta03400]
    DYST_00402
Enzymes [BR:dta01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DYST_00402
DNA replication proteins [BR:dta03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DYST_00402
DNA repair and recombination proteins [BR:dta03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DYST_00402
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DYST_00402
   MMR (mismatch excision repair)
    DNA ligase
     DYST_00402
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DYST_00402
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT Zn_ribbon_NUD
Other DBs
NCBI-ProteinID: ULU23505
LinkDB
Position
493284..495311
AA seq 675 aa
MFSVEPKLDGLAISLRYENGVFVQGATRGDGETGEDVTANLRTVRAIPLRLRGEGWPRVL
EVRGEVIMLHKDFEAFNEHARARDEKTLANPRNGAAGSLRQLDPAITARRKLSFFAYAVG
EVQGGELPTTHSTTLAKLRDWGFPVSPEVDTAKGFEGLLAYYRRIRAKRDKLPYDIDGVV
YKLDDYEGQRAMGFVSRAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLKPVQV
AGVTVTNATLHNADQVARLDVRVGDTVVVRRAGDVIPEVVRIMPDLRPAHTHPWHMPTHC
PVCGSALLREEGEAAWRCSGGLVCPAQRKEALIHFAARRAMDIEGIGERFVDALVDFGYV
HTPADLYTLTLDDFLEMKRRADERDGTTPETVKQGKVATKWAENLIEAIEASKRTTLPRF
LFGLGIMHIGESTAKTLAAWLGSLAMIRRMPAAVLRVLPDIGDEVARSTAGFFAQEGNQK
VVDALLASGIVFSDETHPSAKLHQRLDLAVLLDMVGISKLGPKSTKLLAGHFPSLDKLIA
AGPAHWVTAGLPSAASTNLEAFLHNKASLQQLREADVAMWELLDAIPKSTKAVAAPLEGQ
TIVLTGTLTSLSRDEAKERLEALGAKVAGSVSKKTSFVVAGEAAGSKLDKAQELGVEVWD
EARLIELLATHEGGA
NT seq 2028 nt   +upstreamnt  +downstreamnt
gtgttttcggtggagcccaaactcgatgggctggccatcagcctccgctatgagaacggc
gtatttgtgcagggtgctacgcgtggcgacggtgagaccggcgaggatgtcaccgcgaac
ctgcgcacggtacgtgccatcccgttgcggctacgtggcgaaggctggccgcgtgtgctc
gaagtgcgtggcgaagtgatcatgctgcacaaggatttcgaggcgttcaacgagcatgcc
cgggcacgtgacgagaagacgctggccaatccgcgcaatggcgcggccggttcgctgcgc
cagctcgatcccgctattaccgcccggcgcaagctgagtttcttcgcctacgcggtgggc
gaagtgcagggcggcgagttgcccaccacgcactcgacgacgctggcgaaactccgcgac
tggggttttccggtgtcgccggaagtggatacggcgaagggctttgaggggctccttgcc
tactaccgccgcatccgtgccaagcgcgacaagcttccgtacgacatcgacggcgtggtc
tacaagctggacgactacgaaggccagcgcgcgatggggttcgtctcgcgtgcaccccgc
tgggccatcgcgcacaagttccctgcacaggaacagaccacgacggtcgaggcgatcgag
atccagatcgggcgcaccggtgcggccacgcccgtggcgcgcctgaaacccgtgcaggtc
gctggcgtcacggtgaccaacgcgacgttgcacaacgccgatcaagtggcccgcctggat
gtgcgggtgggcgatacggtggtagtgcggcgcgcgggcgacgtgatccccgaggtcgtg
cgcatcatgccggacctgcgtcccgcccatacccacccatggcatatgcccacacactgc
ccggtgtgcggctcggcactgctgcgcgaagaaggcgaggcggcctggcgttgctccggt
ggtctggtttgtccggcgcagcgcaaggaagccctgatccactttgccgcgaggcgcgcg
atggacatcgaaggcattggcgagcgctttgtcgatgccttggtggatttcggttacgtg
catacgcccgccgatctctacacgttgacgcttgacgacttcctggagatgaagcggcgc
gcagacgagcgcgatggcaccacgcccgagacggtaaagcagggcaaggtggccaccaag
tgggccgagaatctgatcgaggctatcgaggcgagcaagcgcaccacgctgccacgcttc
ctgtttggactcggcatcatgcatatcggtgaaagcacagcgaaaacgctggcggcgtgg
ctgggtagcctggccatgatccgtcgcatgccggcagcggtgttgcgtgtgttaccagac
atcggcgacgaagtggcgcgctcgactgccggcttctttgcgcaggagggtaaccagaag
gtcgtcgatgcgttgctggcgtccggcatcgtgttctccgacgaaacccatccttcggcc
aagttgcaccagcgcctcgacctggcggtgctgctggatatggtgggcatcagcaagctc
gggccgaagagcaccaagttgctggccggccatttcccctcgctggacaagctcatcgcc
gccggccctgcacactgggtcaccgcgggcctgccctcggcggcgtcgaccaatctggag
gcattcctccacaacaaggcgagcctccagcaattgcgcgaggcggatgtggcgatgtgg
gaattgctcgacgcgattccgaaatcgaccaaagccgtcgccgcgccgttggagggccag
accatcgtgctgaccggaacactcacctcgctgagccgcgacgaggccaaagagcgcctg
gaggccttgggtgccaaggtcgccggttcggtatccaagaagaccagtttcgtggtggcc
ggtgaggccgcaggctccaagctcgacaaggcgcaggaactgggtgtggaggtgtgggat
gaggcacgcctgatcgaattgctcgccacgcatgagggcggtgcatga

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