Deinococcus taeanensis: LAJ19_05470
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Entry
LAJ19_05470 CDS
T09106
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dtae
Deinococcus taeanensis
Pathway
dtae03030
DNA replication
dtae03410
Base excision repair
dtae03420
Nucleotide excision repair
dtae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dtae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LAJ19_05470 (ligA)
03410 Base excision repair
LAJ19_05470 (ligA)
03420 Nucleotide excision repair
LAJ19_05470 (ligA)
03430 Mismatch repair
LAJ19_05470 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dtae03032
]
LAJ19_05470 (ligA)
03400 DNA repair and recombination proteins [BR:
dtae03400
]
LAJ19_05470 (ligA)
Enzymes [BR:
dtae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LAJ19_05470 (ligA)
DNA replication proteins [BR:
dtae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LAJ19_05470 (ligA)
DNA repair and recombination proteins [BR:
dtae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LAJ19_05470 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LAJ19_05470 (ligA)
MMR (mismatch excision repair)
DNA ligase
LAJ19_05470 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LAJ19_05470 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
5_3_exonuc
HHH
DUF7317
Motif
Other DBs
NCBI-ProteinID:
UBV43664
LinkDB
All DBs
Position
1122959..1124989
Genome browser
AA seq
676 aa
AA seq
DB search
MSQAEFDRYLALRAEVDRHNRAYYEHDAPTIPDDQYDALARQLRELEVAHPDWAAQVGAS
SPAQTVGGAPSSAFQPVTHPTPMTSLDNAFDDEELRDWQEKLARALGLPADSDDFTFTGE
LKVDGLSVNLYYVDGILQWAATRGNGVTGEIVTAQVLTVPGIPQQLSGLRGELEVRGEVY
MSRAEFASFNAQAEELGTALLKNPRNGAAGALRQKDPEVTRSRHLKAIFYALGKRDGVPV
GTQWDLLTWLRERGFPTSIHSEELRGMAAAADYHARMTAARSTFEFDADGTVLKLNDLRA
QEEAGFTSRAPRWAIAYKFPVEEVETTLESITVNVGRTGKLAPLAHLSPRLIEGSTVSKA
TLHNEDFIRDLDLRVGDTVIVRKSGGVIPQIMRVILDRRPAGTEPFVFPTHCPECGHEAT
RAEGDANTYCPNPACPAQAFERIRYFVSRGAMDVRGIGEKLVAQLLAAGLVRDAADLYTL
SAGQLAGLERGGEKKAQNILAQLEASKTRPLWRLVNALGMNHVGERNAQALARAFGTLDA
LLAATPGQIENVPGMGGVIAQSVTAALADASMRDLITRLRAHGLNPQEEQVTRSEQLAGL
NFVITGSLSRPRDTLKGMLEQAGGRVTGSVTKKTSYLIAGEDAGSKLARAQELGVTILTE
DALDALLAERGVTLFA
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaggccgaattcgaccgctaccttgcgctgagggccgaggtggaccggcacaac
cgcgcttactacgaacacgacgcccccaccatccccgacgaccagtacgacgccctggcc
cggcagttgcgtgaactggaagtggcccacccggactgggccgcccaggtcggcgcgagc
agccccgcgcagaccgtcggcggcgcccccagcagcgccttccagccggtcacccatccg
actcccatgaccagcctggacaacgcctttgacgatgaggaactccgggactggcaggag
aaactggcccgcgccctgggcctgcccgccgactcggacgacttcaccttcaccggggaa
ctgaaggtcgacgggctgagcgtgaacctctactacgtcgacgggatccttcagtgggcg
gccacgcgcggcaacggcgtgaccggcgagatcgtgaccgcgcaggttctcacggtgccc
ggcatcccgcagcagctcagcggcctgcgcggcgagctggaggtgcgcggcgaggtgtac
atgagccgcgccgaatttgcctcgttcaacgcgcaggccgaggaactcggcacggccctg
ctgaaaaacccacgcaatggagcggccggcgcgctgcggcagaaggacccggaagtcacg
cgcagccgccacctgaaagccatcttctacgcgctgggcaaacgcgacggcgtcccggtc
ggcacccagtgggacctgctgacctggctgcgcgagcgcgggtttcccaccagcatccac
agcgaggaactgcgcggcatggccgccgccgccgactaccacgcccgcatgaccgccgcg
cgcagcaccttcgagttcgacgcggacggcacggtgctgaaactcaatgacctgcgcgcc
caggaggaagccgggtttaccagccgcgcgccccgctgggcgattgcctataagttcccg
gttgaagaagtcgaaaccaccctcgaatccattaccgtgaacgtcggccggaccgggaag
ctcgcgcccctcgcgcacctgtcgccgcgactgattgagggcagcaccgtcagcaaggcg
acgctgcacaacgaggacttcatccgcgaccttgacctgcgcgtgggcgacacggtgatc
gtccggaagtccggcggcgtcatcccgcagatcatgcgcgtgattctggacaggcgtccg
gcaggcaccgaaccgttcgtgttccccacccactgtcctgaatgcggacatgaagccacc
cgcgccgaaggcgacgcgaacacctactgcccgaaccccgcctgccccgctcaggccttc
gaacgcatccggtacttcgtgtcgcgcggcgccatggacgtccgcggaatcggggagaaa
ctcgtggcgcagctgctggccgccggcctcgtgcgtgacgccgcggacctgtacaccctc
agcgccgggcagcttgccgggctggagcgcggcggagagaagaaagcgcagaatatcctc
gcgcagttggaggccagcaaaacccgtcccctgtggcgccttgtgaacgctctgggcatg
aatcacgtcggtgaacgcaatgcccaggccctcgcccgggcgttcggcacgctggacgcc
ctgctggccgccacgcccgggcagattgagaacgtgcccggcatgggcggcgtgattgcg
cagagtgtcacagccgcactcgccgacgccagcatgcgtgacctgatcacccggctgcgc
gcccacggcctgaacccccaggaggaacaggtgacgcgcagcgagcagctggccggcctg
aacttcgtgatcaccggcagcctttcgcgcccgcgcgacaccctcaaggggatgctggag
caggccggtggccgcgtgaccggcagcgtcacgaagaaaaccagttacctcattgccggg
gaggatgcgggcagcaaactcgcccgcgcgcaggaactcggcgtgacgatactcacggag
gacgccctggacgccctgctcgccgagcgcggcgtgacgctgttcgcctga
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