Dendrobates tinctorius (dyeing poison frog): 141053811
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Entry
141053811 CDS
T11000
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
dtc Dendrobates tinctorius (dyeing poison frog)
Brite
KEGG Orthology (KO) [BR:
dtc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dtc03036
]
141053811 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
dtc03400
]
141053811 (SMCHD1)
Chromosome and associated proteins [BR:
dtc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
141053811 (SMCHD1)
DNA repair and recombination proteins [BR:
dtc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
141053811 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_8th
Ig_SMCHD1_7th
Ig_SMCHD1_4th
Ig_SMCHD1_6th
Ig_SMCHD1_2nd
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
Ykof
Terminase_4
Motif
Other DBs
NCBI-GeneID:
141053811
NCBI-ProteinID:
XP_073406985
LinkDB
All DBs
Position
Unknown
AA seq
1985 aa
AA seq
DB search
MAAVYDWSEEQHNGGGASHTVTVFLYDRRLQPTSYDEKRLRIRGGYREMCADIRETFGIG
PSEDFVISTTNRKQVTDHNFNGIIKDGITIYILNTIDQVLPSSTQERINFLPHYDTLVKS
GMYEYYASEGQNPLPFALAELIDNSLSATAKNSDIRKIQINLCFDESQGKPTVAVTDNGK
GMTSVQLKNWAVYRLSKFRRGYEGYSDEESYVRPPSMPRSLNSDISYFGVGGKQAVFFIG
HSTRIITKTSDSKDVHEFLISKEDFEAKEKNKESIFTGYIRNRKPTDCSHVTEDEKNLRN
LIMEEEDKKSFTTVIVTGVQPEHILYLKNYRHLWVTQLAHIYHYYVHGASGHVLGNTRIT
QSNRIGIEVNISEKAKVPKRLKLEEVNNDMQTLYINSAADSFEFKALVEREGVVEGIIRY
HPFLYDKETYPEDPYFSSRDNEDIHDVDDDDCFIVQKEARGKRPIFECFWNGRLIPYTTI
QEFDWCAVPKKRGLVPPECYNRISGALFTNDKFEVSTNKLTFLDLGLKLQDKSTIFTRVT
NGQDQRVKIDREFALWLKACHENYDKQIKFSGFKGIIGRLDIASKRMQAPWATFTSIEWD
GKTFKAGQLVKTMKTSPLIYGSIDKFFLYGNHDGDVYATGGEVQIALEPKELYDEMKCVP
ISKLDRNAKLSSINKYIEDEMAKFPDSLAMSWPDGDGLVENDIKSAGDPIGALRIEILNK
KGEAIQKLPGTSHIAAKKLLVELKVLLNSSGGEEEIISHISQHGGKWPYWFKKMENITKL
GDYTLKLQVVLNESNADKYGEKALPCKKIMFKIVEGRPFKFFVGQLDQARVGIPFNIPLN
VQDEFGHSTLLSAEILPILEGSGLTIEYKELSKVPPLMIKGVIIKGQVKSYQGKNCTLKI
TLPGLKEDNQTTKLKLFPGPPKQIQVLPDNDILIIDNGSLFPFQIEIVDEVGNTATQPKL
IVHCKFTGAPSLPVYQLDCSTTGSGILTGPPIKIQNIKKMQLIKAKIAIPSCKDVKPVEK
TIKLQPSTNIAKLEILRVEGDKTINIKHHDEIKWMAGDMVQNIIFKIFDEGDREIIITPE
LAEKLKVNWTPKISIERLLKRMLPDVEVPTSVTNIQYCQVTFHGDTVSLERAFTVKPIPD
EPKYLKCKLKGDNVVRMGEELKSEIELQVTDQFGNPTENISNSSLDFLGVSGNNLDKNKI
KKTFQENTQCMVVKGISFLVGPQEDKELCFAWRSLSAYLRLKLVAGPPFRIGIVDWNESV
TVASGKKVQTPLIIQLYDKWGNPSPEPNVKITVTKDSVLKMSPFVQQPKTDANGQVNMGL
VTFTVPKGVYYLQFKAVNNKNILDSSKIKIKVVTDPDKPAIVSVKFDKGVDFTAGGIFPD
FVVSILSEDRDVIKNLNPSCSAMKMWKSQTTGGKPPATATVFNCNKPRDGDKDGCFYFRD
KMIPERVEKYCIQFMYMAEKATVLYSEQLLIDVVANNPVKLVPLPNPATPTVSNVKAEET
RTLVKNLWLKTVDEHSNLAGVTLNGKIIAEITYSSETEEEIPHFQSNTGTMEFPFENGSA
VIPSLILAENSPGTDSTEYTIKFSLVCQTMEPVDIEPYFLPFLFYNDFKKQQQMAQLTKE
KDKLVESIKAYKCLFDATKQLIKEMESQSEEAKAKETLLQNELKKKKIDLPQKKQVEHVT
NLINKKMGQSKNLFNQPRRKCSLPLFPKGRKDVLGKIAHLANIEDEQVAVVISWHLASDM
DCVVTRTTEAARQIYDETQGRQQVLPLDSIYRNGLKSWGRPLPHIRFFEASGNPVYARDL
LVFPESKEECETVFAMLLGETIILDNLDAANNYRKQLVQFSFCPTLLTRDGDRIRSNGKF
GGLQNKAPPIDKLKGIVFGAPLPREFETTNAEIDLLQQYREAVKRSQTVSEELTKQIQSL
NSPDMQQKNMEFEQQERALKEIEKKLGMTPKNTNKRTDDQFNHLNMSDCPVPSKRVKRDT
LRRTR
NT seq
5958 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagtgtacgactggtctgaggagcagcacaatggcggcggcgccagtcacacc
gtgactgttttcctgtatgaccgtcgcctgcagccgacatcctatgacgagaagcgactg
cggattcgagggggttatcgggagatgtgcgcggacatccgtgagacttttggtatcgga
ccaagtgaagactttgttatctcaacaacaaatagaaaacaggtgacagaccataatttt
aatgggatcattaaagatggcatcactatttatatccttaacacaattgatcaggtcctg
ccttcatcaacacaagagagaattaattttttacctcactatgatacactggtaaaaagt
ggaatgtatgagtattacgctagtgaaggacaaaacccactgccatttgcgcttgctgag
ctaatagacaattcactttcggccacagcaaaaaattctgatattaggaaaatacagata
aacctgtgttttgatgaatcgcaaggaaaaccaactgttgcagttacagataacggaaaa
ggaatgacatcagtccagcttaaaaattgggcagtgtaccgtttatcaaagtttagaaga
ggatatgaaggatacagtgatgaagaaagttatgttcgtcctccttctatgccacgcagt
ctaaacagtgacatctcttattttggtgttggtggaaaacaagcagttttctttattggt
cattccactcgtattatcacaaagacatcagactccaaagatgtccatgaatttttaatt
tccaaagaagattttgaggcaaaggagaagaacaaggaatcaattttcactggctatata
agaaacagaaagcctactgattgttcacatgttacagaagatgagaagaaccttcgtaac
cttatcatggaggaggaggataaaaaaagctttaccactgttattgtaactggtgttcag
cctgagcatatactatacttaaaaaattaccgtcatctatgggtcacacagctagcacac
atctaccattactatgttcatggagcatcaggacatgtattgggtaatacaagaattacg
cagtccaacagaattggcattgaggttaatatatctgaaaaagcaaaggtgcctaaacgc
ctcaaacttgaagaagtcaataatgatatgcagactctgtatattaattctgctgctgac
agctttgagtttaaagctcttgttgaaagagaaggtgtggtggaaggaatcatacgctac
catccatttctgtacgacaaagagacttacccagaggacccatacttctcatcaagagat
aatgaagacattcatgacgttgatgatgatgattgcttcattgtgcaaaaagaagctagg
gggaagagaccaatctttgaatgtttctggaatggaagactgattccttatactacaatc
caagaattcgactggtgtgcagtgccaaaaaagagagggcttgtgcctcctgagtgttac
aaccggatttctggagcattatttacaaatgacaagtttgaagtgagcacaaataaatta
actttcttagatctggggttaaaactacaagacaaaagcaccatttttacaagagtaaca
aatggacaggaccaaagagtaaaaattgacagagaatttgcgttgtggttaaaagcatgc
catgaaaattatgacaagcaaataaagttttctggtttcaaaggaataattggccgactg
gatattgcatcaaaacgtatgcaagctccttgggcaacctttacctccatcgagtgggat
ggaaaaacttttaaggctggacagctggtaaaaaccatgaaaacttcacctctaatttat
ggaagtatagacaagtttttcctttatggaaaccatgatggcgatgtttacgctacagga
ggagaggttcaaattgctttggaaccgaaagaactgtatgatgagatgaaatgtgtaccc
atttccaaacttgatcgtaatgcaaaactatcatctataaataaatacattgaagatgaa
atggcaaagttcccagactcattggctatgtcatggcctgatggggatggtttggtagag
aatgatatcaaatctgcaggagatcctataggagctttacgtattgaaattctgaacaag
aaaggagaagcaattcagaaacttccaggcacaagtcacatagctgcgaagaaacttttg
gtggaattgaaagttcttttgaattcatctggtggcgaggaagaaatcatttctcatata
agtcagcatggaggaaaatggccatactggtttaagaaaatggagaacattacaaagctt
ggtgattatacgctgaaacttcaagtcgtgttaaacgaaagcaatgctgacaaatatggg
gaaaaagccttgccttgtaaaaaaattatgtttaagattgtggagggcagaccgttcaaa
ttttttgttggacaactggaccaagctcgtgttggaataccattcaatataccattaaat
gtgcaagatgaatttggtcattctacattgctttcagcagaaattctgccgattttggag
gggagtggtcttacaatcgaatataaagagctaagcaaggtgccgccattaatgattaaa
ggagtgattattaaaggacaagttaagagctaccagggcaagaattgtacattgaagatt
actttgcctggattaaaagaagacaatcaaactacaaagctaaagttatttcctgggcca
ccaaaacaaattcaagtgctcccagataatgatatccttatcattgataatggatcgctt
tttcccttccaaattgaaatagttgatgaagttggaaacactgccactcagccaaagcta
attgtacactgcaagtttactggtgcaccaagccttcctgtctaccagttggattgcagc
actacagggagtggtattttaactgggcctcctattaaaatccaaaatataaagaaaatg
caattaataaaagccaaaattgcaatacctagttgcaaggatgtaaaacctgtggaaaaa
actattaaacttcagccaagcaccaatattgctaaactggagatacttagagtggagggt
gataaaaccattaacattaaacatcatgatgaaatcaagtggatggcaggagacatggtg
caaaatattatttttaaaatttttgatgaaggggatagagaaattatcatcactccagaa
cttgcagaaaagctcaaagttaattggaccccaaaaatttctattgagagactgctgaag
cgaatgctacctgacgttgaggtgccaacttcagttactaacattcagtattgccaagtg
acttttcatggcgacacggtttctttggagagagcattcactgtaaaacctattcctgat
gaaccaaaatatttgaaatgcaagttaaaaggagacaatgttgtccgcatgggtgaagag
ctaaaaagtgaaattgagttacaggtaacagaccaatttggaaatccgacagaaaacatc
tccaattcaagtcttgattttctgggtgtctctggtaataatctcgacaaaaataaaatc
aaaaagacatttcaggaaaacactcaatgtatggttgtgaaagggatatcttttttggtt
ggacctcaagaggacaaagagttatgttttgcttggagaagtctttcagcctatttgaga
ctgaaacttgttgcggggccaccattccgaattggaatagtagattggaatgagtctgtt
acagtagcctctggaaaaaaggttcaaacacctctaattattcagctctatgataagtgg
ggaaatccatctccggaaccaaatgtgaagatcactgtgacgaaggacagtgttctgaag
atgagtccttttgttcagcagcctaaaactgatgctaatggtcaagtgaatatgggactg
gttactttcactgtgcctaagggagtgtattatttgcagtttaaagctgtgaataacaag
aatattctggatagttctaaaataaagattaaagttgtaacagatcctgataaaccagcc
attgtttctgtaaaatttgataagggtgtagattttactgctggaggtatttttcctgac
tttgtggttagtattctttctgaagatagagatgtcatcaagaacctgaacccatcctgc
agtgccatgaaaatgtggaagtcacaaacaactggtggaaaacctccagccactgcaaca
gtgtttaactgcaacaaaccaagagatggtgataaagatggctgcttctatttcagggat
aaaatgatacctgaacgtgttgaaaagtactgcatccagtttatgtatatggctgagaag
gctactgtactttatagtgaacagctattaatagacgtggtcgccaacaatcctgtgaaa
ttagttccactccccaacccggccaccccaacagtgtccaatgttaaagctgaagaaact
cgcactttagtcaagaatctctggcttaagactgtggatgagcacagcaatttagctggt
gttaccctgaacgggaagatcattgcagagataacatactcctctgagactgaggaggag
ataccacatttccagtctaatacaggaactatggagtttccttttgaaaatggatctgct
gtcattcctagtctcattcttgcggagaacagtccaggaacggacagtacagaatataca
attaagttttcacttgtttgccaaactatggaaccggtggatatagagccctatttcctt
ccattcttattttacaatgatttcaaaaagcagcagcagatggcgcagcttacgaaggag
aaagacaagttagtggaatcgattaaggcttataaatgtctatttgatgcaacaaaacag
ctgatcaaagaaatggaaagtcagtcagaagaagccaaggccaaagaaacgctcttgcaa
aatgaattaaagaaaaagaaaattgatttgcctcagaaaaaacaggtagagcatgttact
aatctcataaacaagaagatggggcaatcgaagaacttgtttaatcaacctagacgaaaa
tgctccttgcctctctttccaaagggcagaaaggatgttttaggaaagattgctcattta
gcaaacattgaagatgagcaagttgccgttgtaatctcatggcatttagctagtgatatg
gactgtgtggtgactcggaccactgaagctgcccgtcaaatctatgatgagacacagggc
cgacaacaagtcctaccattagattccatatatcgaaatggtctgaaaagctggggaagg
cctctaccacacatacgtttctttgaagcttcaggtaatccagtgtacgctagggatctc
ctggtgttcccagaaagcaaagaggagtgtgaaacagtttttgcaatgcttttgggtgaa
acgataattctggataaccttgatgcagctaacaactatagaaaacagcttgttcagttt
tcattttgcccaacgttgctgactagagatggagacagaatccgcagcaatggaaagttt
ggcggattgcaaaacaaagcccctcctattgacaaacttaaaggaattgtgtttggggct
ccactgcccagagaatttgagactacaaatgctgaaatagatctcttacagcagtatcgt
gaagcagtaaaaaggtcccagacagtgagtgaagagcttacgaagcagattcaaagcttg
aactcgcctgatatgcagcagaaaaacatggagtttgagcaacaagaaagggctctaaag
gaaattgagaaaaaacttggtatgaccccaaaaaatactaacaaaagaacagatgatcag
tttaatcatcttaatatgtccgattgtcctgttccttcaaaacgagtaaaaagagataca
ttaagaagaaccagataa
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integrated database retrieval system
