Desulfomonile tiedjei: Desti_2884
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Entry
Desti_2884 CDS
T02147
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dti
Desulfomonile tiedjei
Pathway
dti03030
DNA replication
dti03410
Base excision repair
dti03420
Nucleotide excision repair
dti03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Desti_2884
03410 Base excision repair
Desti_2884
03420 Nucleotide excision repair
Desti_2884
03430 Mismatch repair
Desti_2884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dti03032
]
Desti_2884
03400 DNA repair and recombination proteins [BR:
dti03400
]
Desti_2884
Enzymes [BR:
dti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Desti_2884
DNA replication proteins [BR:
dti03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Desti_2884
DNA repair and recombination proteins [BR:
dti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Desti_2884
NER (nucleotide excision repair)
GGR (global genome repair) factors
Desti_2884
MMR (mismatch excision repair)
DNA ligase
Desti_2884
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Desti_2884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AFM25553
UniProt:
I4C7L2
LinkDB
All DBs
Position
complement(3390709..3392745)
Genome browser
AA seq
678 aa
AA seq
DB search
MSGQNAIPSQDIIDEVEALRKTIRDHDFNYYVLDSPEITDAEYDKLFRRLQDLETQYPEL
ITPDSPTQRVGGKPLEKFGQVRHAIPMVSLSNIFDESELLEFDVRTKRSLGTGNELSYVV
EPKLDGVAVELIYENGFLSTAATRGDGFTGEDVTANVRTIKWIPLKLQTRASDALLEVRG
EILMNRADFDRLNEKREKRGFATFANPRNAAAGSIRQLDPRITASRNLRFIAHGVGRIEG
SIPETQYGILEKLQSLGLPVNMGLTRLCENIQQVLEHYRYLRENRDTLPYEIDGAVLKIN
SLDEQAILGMTARSPRWAVAFKFQPLRTSTQILRIEVGVGRTGTLTPVAIMEPVSVGGVT
VSRASLHNQDEVDRKDVREGDMVVIQRAGDVIPEVVEVLKDLRPADSRPYTIPDNCPVCG
SSAVRLPGQAAKRCVNATCPARLKETIRHFASRNAMDIEGLGVKLIEQLVDLGHVKNPAD
LYYLSKETIKSLERMADKSASNIVASIERSKTVTSDRFLYSLGLPLVGEHVAKILMTAFP
DVATLSEQDTTALQQIHGIGPEVAQSVVSYLREPHNRDMIHRLLSAGVNPEPLARPSDKI
QTVLTGKTVVFTGTLSLPRSEAKKLVETAGGTVSGSVSRKTDYVVAGDEAGSKLDKARGL
GVTVLSEDEFRSLVEAAS
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtccggccaaaacgcgatcccatcacaagacatcattgacgaagtagaagcattgaga
aaaaccattcgagatcacgatttcaattactatgtactggattccccggaaattacggac
gcggaatacgataagctgtttcgtcgccttcaggacctggaaactcaatatcctgagctg
attactcccgattcacctacccagcgggtggggggcaagcctttagaaaaattcggtcaa
gtcaggcatgcaattcccatggtatcgctgtctaatatttttgatgaatcggaattgctg
gaattcgatgtgcggacaaaacgaagtctgggtaccggaaatgaactttcgtacgtggtg
gaacccaagttggacggcgttgcggtggaattaatatacgagaatggattcttgtctaca
gcggctacgcggggggacggcttcacgggggaagatgtcacggcgaacgtgcgtaccata
aagtggattcctctgaaactgcagacgcgagcttccgacgcactgctcgaggtcagaggc
gaaatcctcatgaacagagccgattttgaccgtctgaatgaaaagcgggaaaaacgcgga
ttcgccaccttcgccaatccgcgaaacgccgctgcaggttccattcgacaactggatccg
cgtatcaccgcttcgagaaacttgcgcttcattgcccatggtgtgggaagaatcgaagga
tcgattccggaaacccagtatggaattctggaaaaacttcaatccctcggcttgccggtg
aacatgggattgactcggctttgtgaaaacatccagcaggttttggagcattatcgctac
ttaagagagaacagagacactctgccgtacgaaatcgacggtgcggtgcttaagataaac
tcactcgacgagcaagcaatcttgggtatgacagcccgatctccgcggtgggcggttgcc
ttcaaatttcagccgctccgcaccagcacacagatacttcgtatcgaagttggggtcggc
cgtacaggcacactcacaccagtagcaatcatggaaccggtgagtgtggggggggtaacc
gtttcaagggcttctctgcacaatcaggacgaagtggatcgtaaggacgtgcgtgaagga
gacatggtggtcatccagcgcgcgggagatgtcatccccgaagttgttgaagtgctgaaa
gatctgaggcctgccgacagccgaccctatactattcccgacaattgccctgtgtgcggg
tcttctgcagtccgtttgccgggacaagcagcaaagagatgtgtcaatgccacgtgtccg
gcccgcctgaaggaaacgatccggcattttgcctcgagaaacgccatggacattgaaggg
ctgggagtcaaattgatcgaacagctcgtggatctcggacacgtaaagaatccggccgat
ctgtattatctctcgaaagagactatcaagagcctggagcgcatggctgacaaatcggcc
tccaatatcgtagcgtccatagagcgttcaaagactgtcacatcggaccgtttcctctac
agcctgggacttcctctggttggagagcatgtggcaaaaattcttatgaccgcctttccg
gatgtggcaactctctcggaacaagacaccactgctttgcagcagattcacggaatagga
ccggaagttgctcagagtgtggtttcatatcttcgcgaaccacataatcgggacatgatc
catcggctcttgtcagcgggggtaaatccggaaccgttggccaggccgtctgacaaaata
caaacagtactcaccggcaaaaccgtcgtgtttaccggcacgttgtcgctgcctcgttct
gaagcgaaaaagcttgtcgaaactgccggtggaacggtgagtggatcggtgagtcgaaaa
acagactatgttgtcgccggcgacgaagccggttcaaaattggacaaagctcgtggactt
ggagtcactgttctctcggaagacgagttccgttccctcgtggaagcagcgtcgtaa
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