Deefgea tanakiae: K4H28_07410
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Entry
K4H28_07410 CDS
T08586
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dtk
Deefgea tanakiae
Pathway
dtk03030
DNA replication
dtk03410
Base excision repair
dtk03420
Nucleotide excision repair
dtk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dtk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K4H28_07410 (ligA)
03410 Base excision repair
K4H28_07410 (ligA)
03420 Nucleotide excision repair
K4H28_07410 (ligA)
03430 Mismatch repair
K4H28_07410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dtk03032
]
K4H28_07410 (ligA)
03400 DNA repair and recombination proteins [BR:
dtk03400
]
K4H28_07410 (ligA)
Enzymes [BR:
dtk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K4H28_07410 (ligA)
DNA replication proteins [BR:
dtk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K4H28_07410 (ligA)
DNA repair and recombination proteins [BR:
dtk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K4H28_07410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K4H28_07410 (ligA)
MMR (mismatch excision repair)
DNA ligase
K4H28_07410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K4H28_07410 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
DUF4796_N
Daisho
TbsP_N
Motif
Other DBs
NCBI-ProteinID:
QZA79213
UniProt:
A0ABX8Z9H4
LinkDB
All DBs
Position
complement(1572936..1575344)
Genome browser
AA seq
802 aa
AA seq
DB search
MSDLSSRAETLRRTLNRYAHEYYVLDAPSVPDAEYDRLFQELQAIELAHPELRTADSPTL
RVGGQPLPQFAPVTHVIPMLSIRTETDVSEQGALAFDASVRKELELSDSDSAVEYAAELK
FDGLAISLRYEDGVLVQAATRGDGATGEDVTQNIRTIKQIPLRLRESEGGAAVIPKVLEV
RGEVYMRRDDFEKLNARQRELGEKTFVNPRNTAAGAVRQLDPKIAAERPLSFYGYGLGAI
EGWVLQPDTHSSVLNALTEFGFPVCDIREVVQGGAGLVAYHARVAVLRDDLPFDIDGVVY
KVNSIGLQRQLGFRTREPRWAVAQKFTAEEVLTTIEAIDIQVGRTGALTPVARLAPVFVG
GVTVTNATLHNQDEIERKDIRLGDTVVVRRAGDVIPEVVSVVLDKRPMIDVLGADLFDVK
HVEQYPAYRLPTQCPVCGSHAVREVGEAVTRCTGGLICAAQRKEAVRHFASRRMMDIDGL
GERYIDNLVDLGYVNSLADLYRLTLDDFLEMKRRADDRDGATPESVKAGQVTTKWAENLL
VGIEASKQPPLARFIFALGIRHVGESTAKTLADWLGSLERIRHAPAPLLRLLPDIGSTVA
NSLAEFLAEPHNQQVIDDFLALGVTPQGEHVPNPALREKLTLGALLAALEIPKLSAARCN
ALVVSNSSLAELSSFSLGRLQDAGLSKDIAQSFFDWLTTPAAEVLLQLDTLRTDLLAALP
AAEAVPQGVLSGRTLVLTGTLPTLSRDDAKAMIEAAGGKVSGSVSKKTDFVVAGEAAGSK
LQKAEELGVKVLSEEDLIQLLG
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatttaagctctcgcgcagaaacgttgcgccgcacgttgaatcgttacgcgcat
gaatactatgtgctggatgcgccaagcgtgcccgatgcggaatacgaccgcttgttccaa
gaattgcaggcgattgaattggcgcatcctgaactacgcacggccgattcgccgaccttg
cgcgtgggtggccagcctttgccgcaatttgcgcccgtgacgcatgtgattccgatgttg
tcgattcgtacagaaaccgacgtgagcgagcagggtgctttggcgtttgacgcgagtgtg
cgaaaagagttggagttaagcgactccgactctgcggttgaatatgccgcagaattgaag
tttgatggtttggcgatcagcttgcgctacgaagacggcgtgttggttcaagcggcaacg
cgcggcgatggtgcgacgggcgaggatgtgacgcaaaatattcgcaccatcaagcaaatt
ccgctgcgtttgcgtgaatcagagggcggcgctgcggtaattcctaaagtactcgaagtg
cgcggcgaagtgtatatgcgccgtgatgattttgaaaaactcaatgcacgccagcgcgag
ctgggtgaaaaaacttttgtgaatcctcgcaataccgcggcgggtgctgtgcggcagctt
gatcctaaaatcgcagccgagcgaccactttctttttatgggtatgggcttggtgctatt
gaaggctgggtgctacagcccgatacgcacagtagtgttttaaacgctttgactgaattt
ggttttccagtctgcgatattcgtgaggtggtgcagggcggtgcaggtttagttgcctat
cacgcgcgtgtcgccgtgttgcgcgatgacttgccatttgatatcgacggcgtggtgtac
aaggtgaactcaatcggcttgcagcgtcagttaggctttcgcacgcgcgagccgcgctgg
gcagtggcgcaaaagtttacagcggaagaggtgttaactacgatcgaagcaatcgatatt
caggtcggccgcacgggcgcattaacgccagtggcgcggctggcgccagtgtttgtcggt
ggtgtaaccgtcaccaatgccacgctgcataatcaagatgaaattgagcgcaaagacatt
cgtttgggtgacacggtggtggtgcgccgcgcgggtgatgtgattcctgaggtggtgtca
gtcgtattggataaacgcccgatgatcgatgtattaggtgctgacctttttgatgtaaag
catgtcgagcaataccccgcatatcgtttgcctacgcagtgccctgtgtgtggctcgcac
gcggtgcgagaagtgggtgaagcagtcacgcgatgcactggcgggctaatttgcgctgcg
caacgtaaagaagcggtacggcattttgcctcgcgccgcatgatggatattgatggcttg
ggcgagcgctatatcgataacttggttgatttgggttatgtgaatagcctggctgaccta
taccgtttgacgctggatgattttctagaaatgaaacgccgagcggatgaccgcgacggc
gcaacgccagaaagcgtcaaagcgggtcaagtgacaaccaagtgggcagaaaacctgttg
gtgggtattgaggcgagtaagcaaccaccattggcgcgattcatattcgcgctcgggatt
cggcatgtgggcgaatccaccgcgaaaaccttggctgattggctaggtagcttagagcga
attcgccacgcgcccgcgccgctattacgtttattgcccgatattggcagcacggtggct
aactcattggctgaattcttggctgaaccccacaatcagcaagtgattgatgactttttg
gccttgggcgttacgccgcaaggcgagcatgtccctaatcctgccttgcgtgagaaactg
acactgggtgcattattggccgcgttagaaatcccaaaactgagtgctgcccgttgtaat
gctttggtcgtctcaaatagtagcttggccgaattatcttcatttagccttgggcgtttg
caagatgcaggtctgtccaaagacatcgcgcaatcgtttttcgattggctgaccacgccc
gcggcagaggtcttgttgcagcttgatacgttgcgcaccgatttgctggccgcattgccc
gccgcagaggccgtaccgcagggcgtgttgagtggcagaacgctggttttgacgggcaca
ttgcccacattgagtcgagacgatgccaaagccatgatcgaagcggctggcggcaaagtt
tctggcagcgtatcgaaaaaaaccgattttgtggttgcgggcgaggcggcaggatcgaaa
ttgcaaaaagctgaagagctgggagtgaaggttttgagtgaagaagatctaattcaatta
ctgggttga
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