Dissulfurispira thermophila: JZK55_17390
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Entry
JZK55_17390 CDS
T07039
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dtp
Dissulfurispira thermophila
Pathway
dtp03030
DNA replication
dtp03410
Base excision repair
dtp03420
Nucleotide excision repair
dtp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dtp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JZK55_17390 (ligA)
03410 Base excision repair
JZK55_17390 (ligA)
03420 Nucleotide excision repair
JZK55_17390 (ligA)
03430 Mismatch repair
JZK55_17390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dtp03032
]
JZK55_17390 (ligA)
03400 DNA repair and recombination proteins [BR:
dtp03400
]
JZK55_17390 (ligA)
Enzymes [BR:
dtp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JZK55_17390 (ligA)
DNA replication proteins [BR:
dtp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JZK55_17390 (ligA)
DNA repair and recombination proteins [BR:
dtp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JZK55_17390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JZK55_17390 (ligA)
MMR (mismatch excision repair)
DNA ligase
JZK55_17390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JZK55_17390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Mustang
Tsp45I
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
BCB96817
UniProt:
A0A7G1H524
LinkDB
All DBs
Position
complement(1732677..1734704)
Genome browser
AA seq
675 aa
AA seq
DB search
MTKRMTEDIKKEIERLVKELNYHCYRYYVMDSPVISDEEYDRLYFKLKELEGKYGIVLPD
SPTQRVGAPPLDKFEKVRHKEPMLSLDNAFSYDELMEFDKRVRRLIGTQNEIEYTVEPKY
DGLAIELTYKNGLLYKASTRGDGYEGEDVTLNIKTIKSVPLKIEGANIPDEIDIRGEVYM
DIEDFERLNRERQQKGEPLFANPRNAAAGSVRQLDSSITASRKLHLACYGVGTVKGMEFK
TQFELIKWLEEMRFPIPEIVRLVIGINRVIDAVKEIEEKRMSFPFETDGAVVKVNDFRLQ
SLLGVKTREPRWAIAYKYPAHQGITRIKEILPSVGRTGVITPVAILEPVKIGGVTVSRST
LHNWDEIERKDIRVGDFVVVERAGEVIPHVVTVIKERRTGKEKVFPMPEKCPVCGSKVVR
EEGEVAVRCIGLDCPAQVQERIRHFASRAAMDIEGLGEKNVELLYSKGLISHFIDIYRLK
KEDLLGLPRFAEKSAQNLIDAIEKSKHATLSKFIYALGIMHVGEYAARLIAENFERLEDL
YHVKPERIKEIRQIGEKIAHSVATFFNDLENIKTLEKLKALGLKITNPDFKGRGQMKGPL
DGLTFVITGSLPKPRKEIEDLIESLGGHASSSVSRMTDYLVVGEEPGSKLQKAKSIGVKT
VSYEELLKIIEQRKK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaggatgactgaagacataaagaaagagatagaaagactcgtgaaggagctt
aactatcattgttatcgttattatgtcatggactcacctgtcatatctgatgaggagtat
gataggctttacttcaaactaaaggaactcgaaggaaaatatggtattgttctgcctgat
tcaccaacacagagggtgggtgccccaccacttgataagtttgagaaggtgaggcataaa
gagccaatgctctcgcttgacaatgccttttcttatgatgaactgatggaatttgacaaa
agggttaggagacttattgggacccaaaatgagattgaatatacagtagagccaaaatat
gacggtcttgctatagaacttacatataaaaacgggcttttatataaggcatctaccaga
ggtgatggttatgaaggagaagatgtcaccctgaatatcaagactattaaatcagtgcct
ttaaagatagaaggagcgaatatccctgatgagatagatattcgtggtgaggtatatatg
gacattgaggattttgagaggctgaatagagaaaggcaacagaaaggagaaccactcttt
gcaaatccaaggaatgcagcagcaggctcagtaagacaacttgattcatcaataactgct
tcacggaaattgcatctggcatgttatggtgtagggactgtaaagggcatggagtttaag
acacagtttgagcttataaaatggctcgaggagatgaggtttcctatccctgaaattgta
aggcttgtgattggcatcaatagggtgatagatgctgtaaaagagatagaagaaaaaagg
atgtcttttccatttgagacagacggtgctgttgttaaggtaaatgactttcgtctgcag
agccttttgggagtaaagacaagagagcctcgctgggcaattgcatataaatatccagct
catcaaggaataacaagaataaaagagatattaccaagtgtaggcaggacaggtgtgata
acaccagttgctatattagagcctgtaaagatcggcggtgttactgtctcgcgttctaca
ttgcataactgggatgagatcgaaaggaaggacataagggttggagattttgtggttgta
gaaagggcaggtgaagttatacctcatgttgtaactgtgataaaggaaagaaggacaggg
aaggagaaggtgtttcctatgcctgagaagtgtccggtctgtggctcaaaggttgtgagg
gaagaaggagaggttgctgtaagatgtatcgggctggattgtcccgcacaggtgcaggaa
aggataaggcattttgcgagtagggctgcaatggatattgagggactcggtgagaagaat
gtggaactgctttattcaaaagggctcataagccattttatcgatatatacagactaaag
aaagaggatctccttggacttccaagatttgctgaaaagtcagcacaaaaccttattgat
gcaattgaaaaaagcaaacatgctaccttgtctaaatttatttatgcacttggaataatg
catgttggagaatatgccgcaaggcttatagcagaaaattttgaaagacttgaagatctt
tatcatgtgaaaccagagaggattaaggagataagacagataggtgagaagattgcacat
tcagtggcaaccttttttaatgatcttgaaaatataaaaactttagagaaattaaaggca
cttggactcaagataacaaaccctgatttcaaaggtagaggacaaatgaagggacctctt
gacgggctcacatttgttataacaggctctttgccaaagccaagaaaagaaatcgaggat
ttaatagagagtcttggagggcatgcatcgtcatctgtttcaaggatgacggattatctt
gtggttggagaggagccaggctcaaaactccagaaggctaaatccatcggagtaaaaact
gtttcttatgaggaattattgaagattatagagcagaggaagaagtga
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