Candidatus Desulfovibrio trichonymphae: RSDT_0214
Help
Entry
RSDT_0214 CDS
T05578
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr03030
DNA replication
dtr03410
Base excision repair
dtr03420
Nucleotide excision repair
dtr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSDT_0214 (ligA)
03410 Base excision repair
RSDT_0214 (ligA)
03420 Nucleotide excision repair
RSDT_0214 (ligA)
03430 Mismatch repair
RSDT_0214 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dtr03032
]
RSDT_0214 (ligA)
03400 DNA repair and recombination proteins [BR:
dtr03400
]
RSDT_0214 (ligA)
Enzymes [BR:
dtr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RSDT_0214 (ligA)
DNA replication proteins [BR:
dtr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RSDT_0214 (ligA)
DNA repair and recombination proteins [BR:
dtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RSDT_0214 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSDT_0214 (ligA)
MMR (mismatch excision repair)
DNA ligase
RSDT_0214 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RSDT_0214 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT
HHH
PTCB-BRCT
Zn_ribbon_SprT
zf-tcix
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
BAV91726
UniProt:
A0A1J1DXA5
LinkDB
All DBs
Position
complement(277797..279878)
Genome browser
AA seq
693 aa
AA seq
DB search
MSHPKNQPGAPEQHDSLSEQPAAGARSRVERLTADLERHNYLYHTLDAPEISDDLYDALF
HELQTLERLYPRLRSGYSPTLRVGGGLLDGLTKKNHSRRMYGLENVFSGAELRNFLARMR
RVLPEAPLLFWCDPKLDGLALEIIYENGVLTEALTRGDGASGEMVTDAVRTIQTVPLRLA
GAGPFPELLEVRGEVIIFKKDFAALNERQEALGRKQFANPRNAAAGAVRQLNIAVAESRP
LRFLAYSLGSVIWSPAPASGRQHDVMERLATWGFLTPPEGKLCAGVGEVETYADFVRERR
PQFTMEIDGIVIKQDSLEAQEALGFTARAPRFAVAYKFPASQVETLLRRIDVQTGRTGVL
TPVAVLEPVSVGGVMVSRATLHNEDEICRRDVREGDTVIVQRAGDVIPEVVGPVPGKRRA
GSRAYVFPHVCPACGETAHRETGEAAWRCGNLSCPAVRLLRVVHFVSKAGLDIQGIGQKR
IGQFVGAGIVQSPADLFVLTVEALLHFERMGEILAKKIVSAFDEARLSATLPRLISALGI
RHVGGQTARLLAGRYRTLDELGRADAETLQSLPDVGPEVAASIRNFFDSPTNRALLVRFR
ELGLWPQGATSASGENALRGKSVLFTGSLSLPRARALELAEAAGAVPASSMSKKLDYLVV
GEKPGGKLAKADSLGVAVLDETAFMALLASAGL
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcatccaaaaaatcagccgggcgcgccggaacaacacgattccctttctgaacag
cctgccgccggggcgcgctcacgcgtggaacggctgaccgcggatctggaacgccacaat
tatctgtaccacacgctggacgcgccggaaatcagcgatgacctatacgacgccctgttt
catgagctgcagacgcttgagcgcctgtatccccgcctgcgcagcgggtactcgcccacc
ttgcgcgtgggcggcggacttctggacggcttgacgaaaaaaaaccacagccgtcgtatg
tacggtctggaaaatgttttttccggcgcggaactgcggaattttctggcccgcatgcgg
cgagtcctgcccgaagcccctctgcttttctggtgcgatcccaagctggacggactggct
ctggaaatcatttatgaaaacggcgtgctgacggaagcgctgaccaggggggacggcgca
agcggcgaaatggtcaccgacgccgtgcggactatccaaaccgtccccttgcggcttgcc
ggcgcggggccttttccggaacttctggaagtgcgcggcgaagtgatcatttttaaaaag
gatttcgcagccctgaacgaacggcaggaggccctcggccggaagcaattcgccaacccg
cgaaacgcagccgcgggtgcggtgcgtcagttgaatatcgccgtcgcggaatcccgccct
ttgcgttttctcgcttacagtctcggcagcgtcatctggtcacccgcgccggccagcggg
cggcagcacgacgttatggaacgccttgcgacctggggttttttgacgccgccggaaggc
aaactctgtgccggcgtgggtgaggtggaaacatatgcggactttgtgcgtgaacgcagg
ccgcaatttaccatggagattgacggcattgtgatcaagcaggacagtctggaggcccag
gaggctttgggcttcacggcccgcgcgccgcgttttgccgtggcatataaattcccggcc
agtcaggtggaaactctgctcaggcgtattgacgtacagacagggcgcaccggcgtgctc
acacctgtggccgtgcttgagcctgtgtctgtgggcggtgtcatggtttcccgcgccaca
ctgcacaatgaagatgaaatttgccggcgcgatgtgcgtgagggagatacggtcattgtg
cagcgggccggcgacgtcatccccgaagtggtggggccggtgccgggcaaaaggcgggcg
gggtccagggcgtatgtgtttccccatgtctgtccggcttgcggggaaacggcgcacaga
gagaccggcgaagcggcctggcgttgcggcaatctttcctgcccggcggttcgtttgctg
cgtgtcgtccattttgtgtccaaagccggtctggatattcagggcatagggcaaaaacgg
attggacagtttgtaggggcgggcattgtgcagtccccggcggatctgtttgtgctgacg
gttgaagctttgcttcattttgaacgcatgggcgaaattttggcaaaaaaaattgtgtcc
gcttttgacgaggcgcggctttcggcgacattgccgcgtttgatcagcgctctcggcatc
cgccatgtgggcgggcagacagcgcgtttgctggccgggcgctatcgcacgctggacgag
ttgggccgggctgatgcggaaaccttgcaatccctgcctgatgtcggtccggaagtggcg
gcgtccatccgcaatttttttgacagtccgacgaatcgcgccctcctggtccgttttcgc
gagctggggctctggccgcaaggcgcaacgtctgcgtccggcgaaaacgcgctgcggggc
aaaagcgtgctgtttaccggcagcctctcgcttccgcgtgccagagctttagagttggcg
gaggcggcaggcgccgttcccgcaagcagcatgagtaaaaaactggattatctggtggtc
ggggagaagccgggcggcaaactggcaaaagccgattcgttgggcgttgctgtgcttgac
gagacggcatttatggcattgctcgcttctgcgggcctataa
DBGET
integrated database retrieval system
