Candidatus Desulfovibrio trichonymphae: RSDT_0657
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Entry
RSDT_0657 CDS
T05578
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RSDT_0657 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dtr03400
]
RSDT_0657 (nth)
Enzymes [BR:
dtr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RSDT_0657 (nth)
DNA repair and recombination proteins [BR:
dtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RSDT_0657 (nth)
Prokaryotic type
RSDT_0657 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
Motif
Other DBs
NCBI-ProteinID:
BAV92169
UniProt:
A0A1J1DQQ2
LinkDB
All DBs
Position
867317..868033
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AA seq
238 aa
AA seq
DB search
MIAEHTRRVACAQKILMVLAARYPRHAPQLAARNAWELLVATVLAAQCTDTRVNTITPEL
FRRWPGPQELATADQTELESVIRSAGFYHSKAKNLLGAAVRVRDVFDGRVPDSLENLTSL
PGVARKTANVVLFGAYGRNEGLAVDTHVKRIAYRLGLTDQTDPDRVEQDLIVLFPRREWG
NVNHRMVLFGRDICHARYPCCNECEMNVFCPRRACPPSSGRNKPGRGEQPRKTSRRVS
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgattgcagagcatacccggcgcgtagcgtgtgcgcaaaaaatcctcatggtgctggcc
gcgcgttaccccaggcatgctccacagcttgcggcacgcaacgcgtgggaactgctggtc
gccaccgtgctggcggcccagtgcacagacacgcgcgtcaacaccattacgccggaactt
ttccggcgctggcctgggccacaagagctggcgaccgccgatcagacagagcttgagtct
gtcatccgttccgcgggcttttaccacagcaaggcaaaaaatttgctgggcgcggctgta
cgcgtgcgggatgtttttgacggccgcgtgccggacagtcttgaaaatttgacatctctg
ccgggtgtggcccgcaaaacagccaacgttgtgcttttcggcgcatacgggcgcaatgag
ggacttgcggtggacacgcacgtcaaacgcatagcttaccgcctcggccttacggaccag
acggatcctgatcgtgtggaacaggatttgattgtcctttttcctcgtcgggagtggggc
aatgtcaatcaccgcatggtgctcttcggccgggatatatgccatgcccgatacccctgt
tgcaacgagtgtgaaatgaacgtcttctgcccgcgccgcgcctgtcccccatcttccggt
cggaacaaacccggcaggggagaacagccgcgtaaaacatcccgccgcgtgtcttaa
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