Duncaniella sp. B8: FDZ78_14175
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Entry
FDZ78_14175 CDS
T05963
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dun
Duncaniella sp. B8
Pathway
dun03030
DNA replication
dun03410
Base excision repair
dun03420
Nucleotide excision repair
dun03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FDZ78_14175 (ligA)
03410 Base excision repair
FDZ78_14175 (ligA)
03420 Nucleotide excision repair
FDZ78_14175 (ligA)
03430 Mismatch repair
FDZ78_14175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dun03032
]
FDZ78_14175 (ligA)
03400 DNA repair and recombination proteins [BR:
dun03400
]
FDZ78_14175 (ligA)
Enzymes [BR:
dun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FDZ78_14175 (ligA)
DNA replication proteins [BR:
dun03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FDZ78_14175 (ligA)
DNA repair and recombination proteins [BR:
dun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FDZ78_14175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FDZ78_14175 (ligA)
MMR (mismatch excision repair)
DNA ligase
FDZ78_14175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FDZ78_14175 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Auto_anti-p27
HHH
BRCT_2
DUF2335
WH_Rok
Zn_ribbon_NUD
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QCP73614
UniProt:
A0AAE6BZX8
LinkDB
All DBs
Position
complement(3306667..3308682)
Genome browser
AA seq
671 aa
AA seq
DB search
MSAQQRITELRKELDRLNHAYYVENSPLASDYDYDMMMKELEKLESEHPEFDDPLSPSHR
VGSDITKGFTQVAHVRPMLSLGNTYSVEEVDDWIRRCNDLLGNLEGLKSVPIVGEMKFDG
TSISLIYENGRLVRAVTRGDGEKGDDVTENVKTIRSIPLVLQGSGYPQSFEIRGEIVLPW
KAFDRLNEERAFNEEPLFANPRNAAAGTLKMQNSAEVSRRGLDAYFYYLISDELPADNHY
DNMIAARSWGFKVSNLMTLMDSIEEVDSFITRLDQERKELPVATDGLVFKVNSLRQQLNL
GYTSKSPRWAIAYKFSAERALTRLRFVSFEVGRMGVITPVANLEPVLLSGTIVKRASLHN
EDIVKTLGIHEHDMLYVEKGGEIIPKITGVDEAAREEGAMPIKFVTHCPDCGTPLVRIPG
EAAWLCPNKYGCRPQIIGRLEHYVGRHAMDIDGVGEENAALLYDAGLVRNIADFYILQAS
DLEQLDRIGPRSAQRILEGAEKSKSVSFDRVVYALSIPFVGGTVAKKLAKGTRDIDTLMG
MSRDELVAIDDIGPRIADAVIEYFSVESNREIINRLREYGLQMSLPEEEESEKSDLLAGK
TIVISGVFARHSREEYKEMIERNGGKNSGSISKKTSFVLAGDNMGPAKLEKAKSLGVPVI
NEDRFLEMLTE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcccagcaacgtatcaccgaactccgaaaagaacttgaccgcctgaatcatgcc
tactatgtagaaaattcgccgttggcgagtgactacgactatgacatgatgatgaaagaa
cttgaaaaacttgaatccgaacaccctgaatttgacgatccgctctcaccgtcacatcgc
gtgggatccgatataaccaaagggtttacccaagtggctcatgtcaggccgatgctttcg
ctgggcaacacctacagcgtggaagaggtggatgactggattcgccgctgtaatgacttg
ctcggaaatcttgaagggcttaaatcggtgccaatagtcggcgaaatgaagtttgacgga
accagtatctcgcttatctatgaaaacgggcgtctggtcagagccgtgaccagaggtgac
ggggagaaaggcgatgatgtgactgagaacgtcaagactatacgcagtatccccctggtg
cttcagggatcgggctatccgcagtcattcgagatccgtggcgagatagtgctcccttgg
aaagcatttgaccgtctgaatgaggagcgagctttcaatgaagagcctctgttcgccaat
ccgcgcaatgcagcggccggaactcttaagatgcagaattcagccgaagtatcgcgcaga
ggtctcgatgcatatttctattatctgatttcagatgagctcccggctgacaatcattat
gacaatatgatagctgcccggtcatggggattcaaggtcagcaatctgatgactctgatg
gattcgatcgaggaggtcgatagtttcatcactcgccttgaccaggagcgcaaggagttg
ccggtcgctactgacgggcttgttttcaaggtcaacagtcttcgccagcagctgaatctt
ggctatacatccaaatcgccccgctgggcgattgcatacaaattttcggcagagcgcgcc
ctgacccgcctgcgcttcgtttcgtttgaagtcggtcgcatgggggtgataaccccggtg
gccaatcttgagccggtgctgctttccggcacgattgtgaaacgggcttcgcttcataat
gaagacattgtcaagactcttggaatccatgagcatgacatgctctatgtggagaaggga
ggggagatcattcccaagataaccggagttgacgaggcggcgcgtgaagagggtgcgatg
ccgataaagtttgtgacccattgtccggactgcggcactccgcttgtgcgcattcccggc
gaggcggcatggctctgtcccaacaagtatggctgccgtccgcagatcatcggacgtctt
gagcattacgtaggccgccacgcaatggatattgacggagtgggagaggagaacgccgct
ctgctctatgatgccggacttgtcagaaacattgctgatttctatattctgcaggcctct
gatctggagcaactcgaccgcatcggtccgcgttcggctcagaggattcttgagggtgcc
gagaaatcgaagagtgtgtcgtttgaccgggttgtctatgcgctttcaattccgtttgtc
ggagggactgtggccaaaaagcttgccaaggggactcgtgacattgacactctgatgggc
atgagccgtgatgagctggtggctattgatgatatcggtccgcgtatagccgatgctgtc
attgaatatttcagtgttgaatcaaaccgtgagatcataaaccgcctcagagagtatggg
cttcagatgtcattgcctgaagaagaggagtcggagaagtccgatctgctggcgggcaag
acaatagtgatcagcggagtctttgcccgacattcccgcgaggaatacaaggagatgatc
gagcgcaacggaggtaaaaattccggctcgatctcgaagaagacttcatttgtacttgct
ggtgacaatatggggccggctaaactcgaaaaggccaaatctcttggagtcccggtcatc
aatgaagaccggttccttgaaatgctcacggaataa
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