Dactylosporangium vinaceum: Dvina_35385
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Entry
Dvina_35385 CDS
T07478
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dvc
Dactylosporangium vinaceum
Pathway
dvc03030
DNA replication
dvc03410
Base excision repair
dvc03420
Nucleotide excision repair
dvc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dvina_35385 (ligA)
03410 Base excision repair
Dvina_35385 (ligA)
03420 Nucleotide excision repair
Dvina_35385 (ligA)
03430 Mismatch repair
Dvina_35385 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dvc03032
]
Dvina_35385 (ligA)
03400 DNA repair and recombination proteins [BR:
dvc03400
]
Dvina_35385 (ligA)
Enzymes [BR:
dvc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Dvina_35385 (ligA)
DNA replication proteins [BR:
dvc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dvina_35385 (ligA)
DNA repair and recombination proteins [BR:
dvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Dvina_35385 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dvina_35385 (ligA)
MMR (mismatch excision repair)
DNA ligase
Dvina_35385 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dvina_35385 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
DUF7575
Motif
Other DBs
NCBI-ProteinID:
UAB93506
LinkDB
All DBs
Position
complement(7891716..7893809)
Genome browser
AA seq
697 aa
AA seq
DB search
MADAFDTRSDYRTAIEQVRTAAAAYYSGPDLAMDDADYDALMHRIAATEEAHPQWKPEDS
PTEVVAAGGGVVGDVVHSEPMLSLDNVFDEDSLRRWAARLDKLLGRPAAGYTVEPKIDGL
AVAARYEDGRLVQVATRGDGRAGEDVTGQARRAAGLPERLTEPLTIEVRGEVFMTDADFE
VANAMRTGTGEPPFAHPRSAAAGTLRAQDRTYDAPMSFLAYGVRGLGDGPHSAAMAELQR
LGVASTGGGPVCATIDEILVAVKELSEGRATLGYGIDGAVIKADDPADRDQAGSGSRAPR
WGIAYKFPADTRTTRLKAIEVQIGRTGVITPVAVLEPVQISGVIVTSATLHNFDDLVRRN
VRAGDTVFVRRAGDVIPEITGAKLDERPADSVPFEPPAHCPRCGGEIDRTQKRWRCTTGR
ACGAREALSYYASRDCLDIEGLGGKIIDMLIASGRVTDPADLYDLDVPTLSAFDRMGEVS
ATKLVTAIQASKSQPLGRVLTGLGVRMTGRSMSRRLATHFGTMDALLAATPLELQEVDAV
GPERAVTIAAELVELAPVIARLAERGVNMTEPTYRPRPTPADPSAPAATDPSATNLSAAG
ADADGTLATPGARLPLQKEDGTPMTVVVTGSVPGLTRNEGNEAVERLGGRSSGSVSKKTD
LVVVGEGAGSKAAKAEALGVTIMPAEAFAELVQASGL
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgcattcgacaccaggtccgactaccgcaccgccatcgagcaggtcaggacg
gccgcggccgcctactacagcgggccggacctggcgatggacgatgcggactacgacgcg
ctgatgcatcggatcgcggccaccgaggaggcgcacccgcagtggaagccggaggactcc
ccgaccgaggtcgtcgcggccggcgggggcgtcgtcggcgacgtggtgcacagcgagccg
atgctgagcctcgacaacgtgttcgacgaggactccctgcgccggtgggcggcccgcctc
gacaaactgctcggccgccccgccgccggttacacggtggagccgaagatcgacggcctg
gccgtcgcggcccgctacgaggacgggcgcctggtccaggtggccacccgcggcgacggg
cgggccggcgaggacgtcaccggccaggcccggcgggccgcgggcctgcccgagcggctg
accgagccgctcaccatcgaggtccgcggcgaggtcttcatgaccgacgccgacttcgag
gtcgccaacgccatgcgcaccggcaccggcgagccgcccttcgcccaccctcgcagcgcc
gccgccggcactctgcgcgcccaggaccgcacctacgacgcgccgatgtcgttcctggcc
tacggtgtgcgcggcctcggcgacggcccgcactccgccgccatggccgagctgcagcgc
ctcggcgtcgcctcgaccggtggcggcccggtgtgcgcgacgatcgacgagatcctggtc
gcggtgaaggagctcagcgagggccgggcgaccctcggctacggcatcgacggcgccgtc
atcaaggccgacgaccccgccgaccgcgaccaggccggctcgggcagccgggcaccgcgc
tggggcatcgcctataagttcccggccgacacccgcaccacgcgcctgaaggccatcgag
gtccagatcggccggaccggcgtcatcacgcccgtcgccgtcctggagccggtccagatc
agcggcgtcatcgtcacctcggccaccctgcacaacttcgacgacctggtccggcgcaac
gtccgcgccggcgacaccgtcttcgtccgccgcgcgggcgacgtcatccccgagatcacc
ggagccaagctcgacgagcgccccgccgactccgtcccgttcgagccgcccgcgcactgc
ccccgctgcggcggcgagatcgaccgcacccagaagcgctggcggtgcacgaccggccgc
gcctgcggcgcccgcgaagccctctcgtactacgccagccgcgactgcctcgacatcgag
ggcctcggcggcaagatcatcgacatgctcatcgcctccgggcgcgtcaccgacccggcc
gatctgtacgacttggacgtaccgacgctgagcgccttcgaccgcatgggcgaggtctcg
gcgaccaagctcgtgaccgccatccaggcctcgaagtcccagccactcggccgggtgctg
accggcctcggcgtgcgcatgacgggccgctccatgtcccgccgcctggccacccacttc
ggcaccatggacgccctgctggccgccaccccgctggaactgcaggaggtcgacgcggta
ggcccggagcgcgccgtcaccatcgccgccgagctggtcgagctcgccccggtcatcgcc
cgcctggccgagcgcggcgtcaacatgaccgaaccgacctaccgcccccgccccaccccg
gccgacccgtccgctcccgccgccaccgacccttccgccaccaacctctccgcggccggc
gccgatgcggacggcaccctggccacgccaggggctcggctacccctgcagaaggaggac
ggcaccccgatgactgtggtcgtgacgggctcggtccccggcctgacccgcaacgagggc
aacgaggccgtagaacgcctgggcggccgctcctccggctccgtctccaagaagaccgac
ctggtcgtcgtgggcgagggcgccggctcaaaggccgcaaaagccgaagcactaggcgtc
accatcatgcccgccgaagccttcgccgaactcgtccaagcctccggcctctaa
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