Nitratidesulfovibrio vulgaris RCH1: Deval_1685
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Entry
Deval_1685 CDS
T02064
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dvg
Nitratidesulfovibrio vulgaris RCH1
Pathway
dvg03030
DNA replication
dvg03410
Base excision repair
dvg03420
Nucleotide excision repair
dvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Deval_1685
03410 Base excision repair
Deval_1685
03420 Nucleotide excision repair
Deval_1685
03430 Mismatch repair
Deval_1685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dvg03032
]
Deval_1685
03400 DNA repair and recombination proteins [BR:
dvg03400
]
Deval_1685
Enzymes [BR:
dvg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Deval_1685
DNA replication proteins [BR:
dvg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Deval_1685
DNA repair and recombination proteins [BR:
dvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Deval_1685
NER (nucleotide excision repair)
GGR (global genome repair) factors
Deval_1685
MMR (mismatch excision repair)
DNA ligase
Deval_1685
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Deval_1685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
Nlig-Ia
HHH
PTCB-BRCT
DUF5788
Motif
Other DBs
NCBI-ProteinID:
ADP86836
LinkDB
All DBs
Position
complement(1890141..1892597)
Genome browser
AA seq
818 aa
AA seq
DB search
MTRPDDNGRDANKTQASSPMTEVKTGRVVDDAPVNDAPENNAAEATSPARHDAIPEEARQ
RAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPALRDEASPTQRVGGEV
LEGLEKQAHTLRMYSLDNAFSRDEWGAFIQRMYNALPDAPSAFWCDPKMDGLALEVIYEN
GVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVVIAKADFEQLNAR
QSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGGTAPWTTHSGLMA
RLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLDDTEAQEALGFTA
RAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVEVSRATLHNEDEI
RAKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERPFVFPENCPECDSPVVRPQGEVAH
RCVNVMCPAVRRQSIIHFVSKAGLDVRGVGERWVQQLVDGGHVTSPVGLFLLTKLDLMRF
ERMGPTSAANFVTALDAARTGATLVRLICALGIRHVGEQTARTLAANFTDLDALREADAE
TLQQLPDIGPEVAGSIRSFFANEGNLELLERLRAIGLWPKRQDAPPASEGADAIVLPLQG
LKVLFTGSLTRVGRTEAEDMARAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVM
EEADFFAMLASGVASVDASEAVAEETPPSQEAAGAEDAPSQGAAHVRTASDETGSASGDD
SRGAAAENDPARPARGGAMSTAEGEDVPRGRAEQLKLF
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
gtgacccgacccgacgataatggccgcgacgccaacaagacgcaggcgtcatctcccatg
accgaagtgaagacgggccgcgttgtcgacgatgcccctgtgaacgatgcccctgagaac
aatgccgcagaagcgacgtctcccgcccggcatgacgcgattcccgaagaggcccgccag
cgcgccgcacaacttcgggcagaccttgagcggcataaccgcctctactacgaacttgat
acgcccgagataagcgacgccgaatacgatgccctctatcgtgaactcgtgggccttgaa
actcgctggcccgcattgcgggacgaggcctcgcccacgcagagagtcggcggtgaagtg
ctcgaagggcttgagaaacaggcgcacaccctgcgtatgtacagcctcgacaacgccttc
tcacgcgacgagtggggggcgttcattcagcgcatgtacaacgcccttcctgacgcccct
tcggccttctggtgcgaccccaagatggacggcctcgcgctggaggtcatctacgagaat
ggcgtcttcacttcggcgttgacacggggcaacggtgaagtgggcgaggtcgtcaccgcc
gccatgcggacggtgcgcaacctgccccttgccctgcgcggagacgacgtgccgcgccgt
atcgaggtgcgcggcgaagtggtcatcgcaaaggccgacttcgaacaactcaacgcgcgg
caatctgccgccgggggcaagcttttcgccaacccgcgcaatgcggcggcggggtcggtg
cgacaactcgatacaaccgtcaccgccggaaggcccttgcagtttctcgcctatggcgtg
ggacaggtggtcctcgaaggcggcaccgcgccgtggacgacccatagcggcctcatggca
aggcttcgtgaatgggggttcgatacgccgccggagggccgtctgtgtgcttcgccggac
gaggtgtgggcatactacgaggcgcttggcgcacgtcgagagtcgcttgccatcgagata
gacggggtcgtcgcgaagcttgatgacaccgaggcgcaggaagccctcggtttcacggcg
cgtgccccacggtgggcactggccctcaagtttcctgcgatgcaggcgcgtacgcgtctc
gatgacatccgtgtgcaagtggggcgcaccggggtgcttacaccggtggcgatactcgaa
cccgtgcgcgtgggcggtgtagaggtctcgcgtgcaacgcttcacaacgaggacgagatt
cgcgccaagggactgatgctgggcgacatggtgctggtacaacgcgctggcgatgtcatc
cccgaggtggtgcgcccactggtcgaagaacgcactggtgacgaacggcccttcgtcttt
ccggaaaactgtccggaatgcgatagccctgtggtcagaccccaaggcgaggtggcgcac
cggtgcgtcaatgtcatgtgtcctgcggtgcgcaggcagtccatcatccatttcgtctcc
aaggcgggcctcgatgtgcgcggcgtgggtgaacgatgggtgcagcagcttgtggacggc
gggcatgtgacctcacccgtcgggcttttcttgctgaccaagctcgacctgatgcgtttc
gagcgcatggggccgacttctgccgccaatttcgtcaccgcgctcgatgccgcccgcaca
ggggcgacgcttgtccggctcatctgcgccctcggcatccgtcatgtgggtgaacagacg
gcacgtacccttgccgcgaacttcaccgaccttgacgccctgcgtgaggccgacgccgag
accttgcagcagttgcccgacatcggccctgaagtggcaggttccattcgcagcttcttc
gccaacgagggcaatctcgaactgcttgaacggttgcgtgccatcggcctatggccgaag
cggcaggatgctccgccggcttcggagggcgctgatgccatcgtactccccctgcaagga
ctgaaggtgctcttcaccggaagcctcacccgtgtgggacgcaccgaggccgaagatatg
gcgcgggctgcgggggccaatatcgccagcagcgtcaccaagtctcttgaccttcttgtc
gtcggcggtaagcccggttcgaaactcgaaaaggcccgaaagcttggcatccgggtcatg
gaagaggcggatttcttcgccatgcttgcgtcgggagtcgcatctgttgatgcttccgaa
gccgtcgcggaggagactccgccctctcaggaagccgcaggcgctgaggatgctccttcg
cagggcgcggcccatgtccgcacggcttccgacgaaacggggtccgcatcgggcgatgat
tctcgcggcgcggcggcagagaatgatcctgcccgtcccgcacgcgggggcgcgatgagc
accgctgaaggtgaagacgtgccacggggcagggcagagcaactgaagctgttctga
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