KEGG   Desulfosarcina widdelii: DSCW_17230
Entry
DSCW_17230        CDS       T06303                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
dwd  Desulfosarcina widdelii
Pathway
dwd03030  DNA replication
dwd03410  Base excision repair
dwd03420  Nucleotide excision repair
dwd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dwd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DSCW_17230 (ligA)
   03410 Base excision repair
    DSCW_17230 (ligA)
   03420 Nucleotide excision repair
    DSCW_17230 (ligA)
   03430 Mismatch repair
    DSCW_17230 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dwd03032]
    DSCW_17230 (ligA)
   03400 DNA repair and recombination proteins [BR:dwd03400]
    DSCW_17230 (ligA)
Enzymes [BR:dwd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DSCW_17230 (ligA)
DNA replication proteins [BR:dwd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DSCW_17230 (ligA)
DNA repair and recombination proteins [BR:dwd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DSCW_17230 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DSCW_17230 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     DSCW_17230 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DSCW_17230 (ligA)
SSDB
Motif
Pfam: DNA_ligase_OB DNA_ligase_aden BRCT HHH_5 HHH_2 PTCB-BRCT Nlig-Ia
Other DBs
NCBI-ProteinID: BBO74306
UniProt: A0A5K7YY59
LinkDB
Position
1826354..1828195
AA seq 613 aa
MKKSDINELVDLLHSYNQAYRQGAPLVSDAEYDQLVEQLRAVAPDHSFLQAVEPEQFPGR
REVRHPVPMLSIEKAYTQDQLERFVARVQKEADALGIGPVEYRLTPKLDGLAGRDDGDIF
ATRGNGEVGYEISSAFAKGVVPIGGRGQGVGEIVVVRSYFEQHMAEFFEHPRNMVVGIVS
SDTLNENAKRALDDGMVHFYPYSQVKPSIVVDGKKLIEQHRQLVDEILSGVDYPTDGVVT
EVTNEELKQRMGATAHHYRWQIAIKTKGQTAETTVVDVQWQVGRTGNITPVMIVEPVPLS
GATIRRVTAHHAGNIRDLGIGPGTSIEIIRSGEVIPKLEAVVEARGEVHLPDTCPSCGLL
LSWQNDFLKCTNQHCRAQIEQRISHWFRILGNADWFGIKTIQKIVDKGHDSLEAVYRLNE
SDFGEMGFGPVQSKNLAEAIAISRTKPVEDWRFLAAFGISNLGTGDSRKLLAHIPLENVP
AIEPKDLIDIKGFGEKTSQSIAASIRDMAGTIVHMLDLNFNLQRTPLVADQEAVDSPIAG
KGIVFTGKMIHGDRQTMQARARELGARVQTAVSGSTDYLVCGEKVGAAKMNKAGKLKVAI
LTEDQYLEMLGNS
NT seq 1842 nt   +upstreamnt  +downstreamnt
atgaaaaaatccgacatcaacgaactcgtcgacctgttgcattcctacaaccaggcctat
cgccagggcgcacccctggtcagcgacgccgaatacgatcaactggtcgaacaattgcgc
gccgtggcgccggaccattcctttctccaggccgtggaacccgagcagttccccggccgc
cgggaagtccgccaccccgtgcccatgctttccatcgaaaaagcttacacccaggatcaa
ctggagcgcttcgtggcccgggtgcaaaaagaggccgacgcgctcggcatcggaccggtc
gaataccggctgactcccaaactggacggtctggccggccgggatgacggcgacatcttc
gccacccggggcaacggcgaagtgggctacgagatttccagtgcttttgccaaaggcgtg
gttcccatcggcggccgcggccagggtgtgggcgaaatcgttgtggtcagatcctatttc
gagcagcacatggccgaattcttcgaacacccgcgcaacatggtggtgggcatcgtctcc
tcggacaccctcaacgaaaacgccaaacgcgcactggatgacggcatggtccatttctac
ccgtacagccaggtcaaaccgtcgatcgtcgttgacgggaaaaaactgatcgaacagcac
cggcaactggtcgacgaaattctgtccggggtggattatcccaccgacggagtggttacc
gaagtcaccaacgaagaactcaagcagcgcatgggtgccacggcccaccactaccgctgg
cagatcgccatcaagaccaagggacagacggccgagacgaccgttgtcgacgttcagtgg
caggtgggacgcaccggcaatatcaccccggtcatgatcgtggagccggtaccgctttcc
ggggccaccatccgtcgcgtgaccgcccaccatgcgggcaacatccgcgatttgggcatc
ggtcccggcacaagcatcgaaatcatccgcagtggcgaagtgattcccaaactggaagca
gtcgtcgaggccagaggagaagtgcatctgcccgatacctgtcccagctgcggcctgctc
ttgagctggcaaaacgattttctcaagtgcaccaaccaacactgccgggcgcagatcgag
cagcgcatcagccattggttccggattctgggcaatgccgactggttcggcatcaagacc
attcagaaaattgtggacaaggggcacgacagtctggaagcggtctaccggctgaacgaa
tcggatttcggggaaatgggcttcggccccgtccagtcgaaaaacctggccgaggccatc
gccatcagtcggaccaagccggtggaggactggcgttttctggccgctttcggcatctcc
aacctgggcaccggggacagccgcaagctgctggcccacattccgctggaaaacgtcccc
gccatcgagcctaaagacctgatcgacatcaaggggttcggtgaaaagaccagccagagc
attgccgcaagcattcgtgacatggccggcaccatcgtccacatgctggacctgaatttc
aatctccagcgcacaccgctggttgccgatcaggaagcggtggacagccccattgccggc
aagggcatcgtcttcaccggaaaaatgattcacggcgaccgtcagaccatgcaggcccgg
gccagggaactgggtgcccgggtgcagacagctgtcagcggcagtactgactatctggtc
tgcggcgagaaagtcggagccgcgaaaatgaacaaagccggaaaactgaaggtggccatc
ctcaccgaggatcagtatctggagatgctcggcaattcgtga

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