KEGG   Deinococcus wulumuqiensis: DVJ83_01015
Entry
DVJ83_01015       CDS       T05579                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
dwu  Deinococcus wulumuqiensis
Pathway
dwu03030  DNA replication
dwu03410  Base excision repair
dwu03420  Nucleotide excision repair
dwu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dwu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DVJ83_01015
   03410 Base excision repair
    DVJ83_01015
   03420 Nucleotide excision repair
    DVJ83_01015
   03430 Mismatch repair
    DVJ83_01015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dwu03032]
    DVJ83_01015
   03400 DNA repair and recombination proteins [BR:dwu03400]
    DVJ83_01015
Enzymes [BR:dwu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DVJ83_01015
DNA replication proteins [BR:dwu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DVJ83_01015
DNA repair and recombination proteins [BR:dwu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DVJ83_01015
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DVJ83_01015
   MMR (mismatch excision repair)
    DNA ligase
     DVJ83_01015
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DVJ83_01015
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT Nlig-Ia HHH 5_3_exonuc BRCT_2 Auto_anti-p27 Prot_ATP_ID_OB_C
Other DBs
NCBI-ProteinID: AXG97981
UniProt: A0A345IE59
LinkDB
Position
178912..181053
AA seq 713 aa
MTDPADLTDAVTDPDAVSGVSPDLRDRYLALRDEVARHNRAYYEQDAPTVPDDVYDRLAR
ELRELESAHPELSAGNSPAQTVGGAPGSAFLPVTHPTQMTSLDNVFDDDELRDWQEKLAR
SLNLPPEHDDFTFTGELKIDGLSVNLYYLGGELQWAATRGNGRVGEMVTAQVLTIPGLPQ
NLDGLKGELEVRGEVYLSRADFAAFNAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRH
LKAIFYALGKRDGVPAQSQWEVLEWLNSRGFPTSRHAERLHGLAAAADYHARMVAARADF
EFDADGTVLKLDPLALQEESGFTSRAPRWAIAYKFPVEEVETVLESITVNVGRTGKLAPL
AHLSPRLIEGSTVSKATLHNEDYIREMDLRPGDTVRVRKSGGVIPQIMGVVLDRRPADAA
PFEFPTHCPVCGHVAVRAEGDANTYCPNPACPAQSFERLRYFVSRGAMDVRGIGEKLVTQ
LLEQELVRDAADLYSLSAEQLAGLERGGDKKAQNILGQLEASKTRPLWRLINALGMNHVG
ERNAQALARAFGTLDELLSATPEQIEAVPGMGGIIAQSVTAALADPAMRDMIARLRASGV
SPEAEQVSRTDQLRGLNFVLTGALSRPRDLIKAELEAAGGRVTGSVTKKTSYLVAGEDAG
SKLARASELGVPVLDEAGLAALLLERGQAGTGAEPSSVPTSSVPTSSESAAES
NT seq 2142 nt   +upstreamnt  +downstreamnt
atgaccgaccccgccgacctgaccgacgccgtgaccgacccggacgccgtatccggcgtg
tcgcccgacctgcgcgaccgttacctcgcccttcgtgacgaggtggcccggcacaaccgc
gcctactacgagcaggacgcgcccaccgtccccgacgacgtgtatgaccgcctcgcccgc
gaactgcgcgaactggagtcggcgcaccccgaattgtccgcgggaaacagcccggcccag
acggtgggcggcgccccgggcagcgcgtttttgccggtgacccaccccacccagatgacc
agcctcgacaacgtgttcgacgacgacgagctgcgcgactggcaggaaaagctggcccgc
tcgctcaacctgccgcccgagcatgacgacttcacctttacgggcgaactgaaaatcgac
ggcctgagcgtcaatctgtattacctcggcggcgagttgcagtgggcggccactcggggc
aatggccgggtgggggagatggtgacggcgcaggtgctcaccattcccggtctgccgcag
aacctcgacgggctgaagggtgaactcgaagtgcgtggcgaagtctacctgtcgcgggcc
gacttcgccgctttcaacgcgcaggccgaagaactcggcacaccgctgctgaaaaacccg
cgcaacggggccgccggagccttgcggcaaaaagaccccgaagtcacgcgcacccggcat
ctcaaggcgattttctatgccctgggcaagcgggacggcgtgcccgcgcagagccagtgg
gaagtgctggagtggctgaattcgcggggctttcccaccagccgccacgccgagcgactg
cacggcctcgccgccgctgccgactaccacgcccgcatggtggccgcccgcgccgatttc
gagttcgacgccgacggcacggtgctcaagctcgacccgctggccttgcaggaggaatcg
ggtttcacctcccgcgcgcctcgctgggcgattgcctacaagtttccggtcgaggaagtc
gaaacggtgctcgaaagcatcacggtgaacgtgggccgcaccgggaaactcgcgccgctc
gcgcacctttcgccccggctgatcgaaggcagcaccgtcagcaaagccacgctgcacaac
gaggactacatccgcgagatggacctgcggccaggggacaccgtgcgggttcgcaagtcg
ggtggggtcattccgcagatcatgggcgtggtgctggacaggcgcccggcggacgccgcc
cccttcgagttcccgacccactgcccggtctgcgggcatgtggccgtgcgggcggaaggc
gacgccaacacctactgtcccaacccggcctgccccgcgcagagcttcgagcgcctgcgc
tatttcgtctcacgcggcgcgatggacgtgcgcggcatcggggaaaagctggtcacgcaa
ctgctggagcaggagctggtgcgcgacgccgctgacctgtacagcctgagcgccgagcag
ctcgccggactggaacgcggcggcgacaagaaggcgcagaacattctgggccaactggaa
gcgagcaagacccgcccgctgtggcgactcatcaacgcgctgggcatgaaccatgtcggg
gaacgcaacgcgcaggcgctcgcgcgggccttcggaacgctggatgagctgctttctgct
acgccggagcaaatcgaggcggtgcccggcatgggcggcatcatcgcgcagagcgtgacg
gcggcgctggccgaccccgccatgcgcgacatgattgcccggctccgggccagcggcgtg
tctcccgaggccgagcaggtcagccgcaccgaccagctcagggggctgaattttgttttg
accggcgccctctcgcgcccgcgtgacctcatcaaggccgaactggaagcggcgggcggg
cgcgtgaccggcagcgtgaccaaaaagacgagttatctggtcgcgggcgaggacgcgggg
agcaaactcgcccgcgccagcgaactcggcgtgccggtgctggacgaagcgggactggcg
gcgctgctgctggagcgcgggcaggccggcaccggggccgagccttcatctgtccccact
tcatctgtccccacttcatctgaatccgctgccgaaagctga

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