Dyadobacter chenhuakuii: NFI80_11735
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Entry
NFI80_11735 CDS
T08460
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dyc
Dyadobacter chenhuakuii
Pathway
dyc03030
DNA replication
dyc03410
Base excision repair
dyc03420
Nucleotide excision repair
dyc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NFI80_11735 (ligA)
03410 Base excision repair
NFI80_11735 (ligA)
03420 Nucleotide excision repair
NFI80_11735 (ligA)
03430 Mismatch repair
NFI80_11735 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dyc03032
]
NFI80_11735 (ligA)
03400 DNA repair and recombination proteins [BR:
dyc03400
]
NFI80_11735 (ligA)
Enzymes [BR:
dyc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NFI80_11735 (ligA)
DNA replication proteins [BR:
dyc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NFI80_11735 (ligA)
DNA repair and recombination proteins [BR:
dyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NFI80_11735 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NFI80_11735 (ligA)
MMR (mismatch excision repair)
DNA ligase
NFI80_11735 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NFI80_11735 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
zf-NADH-PPase
zinc-ribbons_6
DUF6001
Motif
Other DBs
NCBI-ProteinID:
USJ33394
LinkDB
All DBs
Position
complement(2831797..2833887)
Genome browser
AA seq
696 aa
AA seq
DB search
MNPAQQIQELVDQLQHLNYRYYQDNVSEVSDFEFDQLLKQLKALEDQYPELRQEDSPTLR
VGGTITKNFNTVYHRYPMLSLDNTYNEQELRNFDDRVRRGLDGEPYEYICELKFDGISLS
FTYENGVLVRGVTRGDGTRGDEITNNVKTIRSLPLRVKAENVPPVFEIRGEGFMPITSFQ
KLNEEMDTLGENQYANPRNAASGSFKLQDSAETARRGLDCYLYSFLTDTEFFKSHEESLL
GLKSWGFNVSPGWRKVQTIDEVLEFIHEWEEKRLTLPLATDGIVVKINSFEQQRELGFTA
KSPRWAISFKYKAENKPAVLRIVTYQVGRTGAVTPVANLCDITERALPYSKVKGVHLSGT
RVKRATLHNANEVLRLGLEIGDTVFVEKSGEIIPKITGVDISQREKFPTEPLIFPTHCPE
CGSELQRNEGEVAFFCPNDSHCPPQLKGRIEHFIHRKAMNIESLGEGKIELLFDLGLVRT
PADLYDLTNETLLGLEKNILNEETGKVKKISFREKTVENILNGINLSKTVPFKNVLFALG
IRFVGATVAEKLAAYFKSMNALRLATYDQLIAVPEIGGRIAESIASYFSVPENQQLVARL
QAAGIQMESDEKPVELESDMLEGKTFVISGVFENFERDDLKLKIEVNGGRVLSGVSGKLN
YLLAGDNMGPAKLEKARKLGVTILSEEEFLAMIENK
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagcacaacaaatccaggagcttgtagaccaattgcagcatttgaattaccgt
tattaccaggacaatgtttctgaggtttcggattttgaattcgatcagttgctgaaacag
ttaaaggcgcttgaagatcaataccctgaactgcggcaggaagattctccaacgctgcgg
gtcggtgggacgattaccaagaatttcaacacagtttaccatcgttatccgatgctttcg
ctggataacacctataacgagcaggaactaaggaatttcgatgaccgcgtgcgccgagga
ttggatggggagccgtatgaatacatttgtgagctcaaatttgacgggatttcactgagt
tttacttacgaaaatggcgtgctcgtgcgtggggtgacgcgcggcgacggcacgcgcggg
gatgagatcaccaataatgtaaagaccatccgttcgctgccattaagggtaaaagctgag
aatgttccgcctgtttttgaaattcgcggcgaaggttttatgcccattacgtccttccaa
aagctgaatgaggaaatggacacattgggtgaaaatcaatatgccaacccccggaatgcg
gcgtcgggatcattcaagttacaggattctgcggaaacggcacggcgcggactggattgc
tatctctattcttttcttactgacacagaatttttcaaaagccacgaagaaagcttgctg
gggcttaaatcctggggttttaatgtttcgccgggctggagaaaagtgcagaccattgat
gaggttttagaatttattcatgaatgggaggaaaaacgactgactcttccgctcgcaacg
gacggaattgtagtcaaaatcaactcttttgaacagcagcgcgaactcggttttacggct
aaaagcccacgctgggccatttcatttaaatacaaagctgaaaataaacccgccgtcctg
cgcatcgtgacttatcaggtcgggcggacgggagccgtgacgccggtggcgaacctgtgc
gacattaccgaacgcgcattgccttacagcaaagtgaaaggcgttcatctttcagggacg
cgcgtgaagcgggctacattgcacaatgccaatgaagtgctgcggctgggactggaaatc
ggggacacagtttttgtcgaaaaaagtggtgagatcattccgaaaataacaggcgtagat
atttcacaacgcgaaaaattcccaactgaacctttaatttttcccacacattgccccgaa
tgcggctccgaattacagcgcaatgaaggtgaagtcgcctttttctgtcccaatgacagc
cattgcccaccgcaactgaagggccggatcgagcattttattcaccggaaagcaatgaac
attgaaagtctgggcgaagggaaaatagaactgctcttcgatctcggccttgtgcggaca
cctgctgatctttacgacctgactaatgaaacgcttctcggcctcgaaaagaacattctt
aatgaagaaacgggcaaggtgaagaagatcagcttccgcgaaaaaacggttgagaacatt
ctgaatggtataaatctatccaaaacggttccttttaaaaatgtgctttttgcattggga
atcaggtttgtgggggcgacggtggctgagaaactggccgcttatttcaaatccatgaat
gcgttgcgattggccacttacgaccagctcattgccgtcccggaaattggcggaaggatc
gcggagagcattgcttcctatttcagcgtgcccgaaaaccagcaattggtggcacgcttg
caggctgcgggcatccagatggaaagtgacgaaaagcctgttgaactcgaaagcgacatg
ctggaaggcaaaacctttgtgatatccggcgttttcgagaattttgaaagggacgatctc
aaattgaaaatcgaggtcaatggcggccgggtcctaagcggcgtttcgggtaagctcaat
tacttgcttgcaggcgataatatggggcctgccaagctcgaaaaggcgcgcaaattgggc
gttaccattctcagcgaggaagaatttttagcgatgatcgagaataagtga
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integrated database retrieval system
