Dyella sp. GSA-30: DYGSA30_35200
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Entry
DYGSA30_35200 CDS
T10269
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dyg Dyella sp. GSA-30
Pathway
dyg03030
DNA replication
dyg03410
Base excision repair
dyg03420
Nucleotide excision repair
dyg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DYGSA30_35200 (ligA)
03410 Base excision repair
DYGSA30_35200 (ligA)
03420 Nucleotide excision repair
DYGSA30_35200 (ligA)
03430 Mismatch repair
DYGSA30_35200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dyg03032
]
DYGSA30_35200 (ligA)
03400 DNA repair and recombination proteins [BR:
dyg03400
]
DYGSA30_35200 (ligA)
Enzymes [BR:
dyg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DYGSA30_35200 (ligA)
DNA replication proteins [BR:
dyg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DYGSA30_35200 (ligA)
DNA repair and recombination proteins [BR:
dyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DYGSA30_35200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DYGSA30_35200 (ligA)
MMR (mismatch excision repair)
DNA ligase
DYGSA30_35200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DYGSA30_35200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
BDU22063
LinkDB
All DBs
Position
complement(4197270..4199642)
Genome browser
AA seq
790 aa
AA seq
DB search
MSQPNAKTRAADLRAQLEHANYRYHVLDDPEIPDAQYDALMRELEALEAAHPELAVPDSP
TRKVGARAQGGFAEVRHAIPMLSLSNAFEQPGDTTRERFHEVAEFERRIEQTLDRRDPVF
SVEPKLDGLAISLRYEDGLFVQGATRGDGETGEDVSANLRTVRAIPLRLRGQGWPRVLEV
RGEVIMLHKDFEAFNERARTTGEKPLANPRNGAAGSLRQHDPAVTARRKLSFFAYAVGVV
EGASLPPTHSETLKLLREWGFPVSPEVSTAKGFDGLIKYFERIGAKRDSLPYDIDGVVYK
LDDYAGQREMGFVSRAPRWAIAHKFPAQEQSTTVEAIEINIGRTGAATPIARLAPVQVGG
VTVTNATLHNADQIARLDVRVGDTVIVRRAGDVIPEVVRVVPESRPAHTKPWQMPTHCPI
CDSALLREEGAAAWRCSGGLICAAQRKEALIHFAARRAMDIEGIGERFVDALVDFGYVHT
PADLYKLTLDDFLEMKRRADERDGSTPETVKAGKIATKWAENLIEAIEASKHTTLPRFLY
GLGIMHIGESTAKTLASWLGSLDIIRAMPEPVLLVLPDIGGEVANSIAGFFAQEGNQQVV
DALLAAGITFSDESTPSPKLRKQLSLSVLLDNAKISKLGPKSTRLLAEHYPTLDKLIAGG
SAHWIVAGLPQAAASGLEAYLADKASLTPLREAEAAMHRLLDAIPKHAAAESAPLEGQTI
VLTGTLSSLSREEAKERLEALGAKVAGSVSKKTSFVVAGEAAGSKLDKAQELGVEVWDEA
ALVALLEKHE
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcccaacgccaagacccgagccgccgacctgcgcgcgcagctcgaacacgcc
aactatcgttatcacgtgctcgacgatccggagatccccgacgcgcaatacgatgccttg
atgcgcgagctggaggcgctcgaagcggcgcatccggagctcgcggttcccgactcgcca
acacgcaaggtcggtgcccgcgcgcaaggcggtttcgccgaagtgcgccatgccataccc
atgctgtccctgagcaatgccttcgagcagcccggcgacaccacgcgtgaacgcttccac
gaggtggccgagttcgaacgtcgcatcgagcagacgctggaccggcgtgacccggtgttt
tcggtcgagcccaagctcgatggcctggcgatcagcctgcgctacgaggacggcttattc
gtgcagggcgcgacccgcggcgatggcgaaacgggcgaggacgtgagcgccaacctgcgc
accgtgcgcgcgattccgttgcgcctgcgtggccagggctggccgcgcgtgctcgaagtt
cgcggcgaggtgatcatgctgcacaaggacttcgaagccttcaacgagcgtgcgcgcacc
acgggtgaaaagccgttggcgaatccgcgcaacggtgcggccggctccctgcgtcagcat
gatccggccgtgaccgcgcggcgcaagctcagcttctttgcctacgccgtcggcgtggtc
gaaggcgccagcctgccgcccacgcattcggagacactcaagttgttgcgcgagtggggc
tttcccgtgtcgcctgaagtcagcacggccaaaggcttcgacgggctgatcaagtacttt
gagcgcatcggcgccaagcgcgacagcctgccgtacgacatcgacggcgtggtctacaag
ctcgacgactatgccggccagcgcgagatgggttttgtgtcgcgtgcgccgcgttgggcg
atcgcgcacaagtttccggcgcaggaacagagcacgacggtggaggcgatcgagatcaat
atcggccgcaccggtgctgcaacaccgatagcacgtctggcgccggtgcaggtcggtggt
gtcaccgtcaccaatgccacgctgcacaatgccgaccagattgcgcgtctggatgtacgg
gtcggcgatacggtgatcgtgcgccgtgccggcgatgtcattccggaagtggtgcgcgtg
gtacccgaaagtcgtcccgcgcataccaaaccctggcagatgccgacgcattgcccgatc
tgcgattcggccttgctgcgcgaagagggcgcggcggcgtggcgttgctcgggcggtttg
atctgcgcagcgcaacgcaaggaggccctgattcacttcgcggcgcgtcgcgcgatggat
atcgaaggcattggcgagcgcttcgtcgatgccctggtcgacttcggctatgtgcacacg
ccggccgatctgtacaagctcacgctcgacgatttcctcgaaatgaaacgtcgtgccgac
gagcgcgacggcagtacgccggaaaccgtcaaggccggcaagatcgccaccaaatgggcg
gagaatctgatcgaggcgatcgaggccagcaagcacaccaccttgccgcgttttctctat
ggcctgggcatcatgcatatcggcgaaagcacggccaagacgctggcatcgtggctcggg
agcctggatatcatccgtgcgatgcccgagccggtgttgcttgtgttgccggatatcggc
ggcgaagtggccaactccattgcagggttctttgcgcaagaaggcaatcagcaggtcgtg
gatgccttactggctgcgggtattaccttcagcgacgagagcacgccatcgccgaagctg
cgcaagcagttgagcctgtcggtactgctcgacaatgcaaagatcagcaagctcggtccc
aagagcacgcgcctgctggcggagcattacccgacgctggacaagttgatcgccgggggc
tcggcccattggatcgtcgccgggttaccacaggcggcggcgtccggccttgaggcctat
ctggccgacaaggcatcgctgacgccgctgcgtgaggccgaagcggccatgcaccggttg
ctcgacgccatccccaagcacgctgctgcggaaagcgcgccacttgagggccagaccatc
gtgctgaccggcacgctgtcgtcgctaagtcgcgaagaggccaaagagcgcctggaagcc
ctgggtgcgaaggtggcgggctcggtatccaagaagaccagctttgtcgttgccggtgaa
gcggccgggtcgaagctggacaaggcgcaggagctgggcgtggaggtttgggatgaggcg
gcgctggtggcgttgttggagaagcacgagtag
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