Dysgonomonas sp. HDW5B: G7051_02525
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Entry
G7051_02525 CDS
T09584
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dyh
Dysgonomonas sp. HDW5B
Pathway
dyh03030
DNA replication
dyh03410
Base excision repair
dyh03420
Nucleotide excision repair
dyh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G7051_02525 (ligA)
03410 Base excision repair
G7051_02525 (ligA)
03420 Nucleotide excision repair
G7051_02525 (ligA)
03430 Mismatch repair
G7051_02525 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dyh03032
]
G7051_02525 (ligA)
03400 DNA repair and recombination proteins [BR:
dyh03400
]
G7051_02525 (ligA)
Enzymes [BR:
dyh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G7051_02525 (ligA)
DNA replication proteins [BR:
dyh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G7051_02525 (ligA)
DNA repair and recombination proteins [BR:
dyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G7051_02525 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G7051_02525 (ligA)
MMR (mismatch excision repair)
DNA ligase
G7051_02525 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G7051_02525 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HNOB
Zn_Ribbon_TF
HHH
Auto_anti-p27
Zn_ribbon_PADR1
HHH_3
BRCT_2
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
QIK53283
LinkDB
All DBs
Position
622483..624480
Genome browser
AA seq
665 aa
AA seq
DB search
MESIGQQIEQLREELNMHNYNYYVLSNPTISDFDFDKKMQELIDLETSHPEYADPSSPSQ
RVGSDITKIFNQVEHNYPMLSLSNTYSEAEVVEFYNRVKKDLNDDFEIVCELKYDGASIS
LTYTDGKLTQAVTRGDGVKGDDITANVKTIRSIPLSLRGNDYPALFEIRGEILMPWKVFE
ELNKERAEQEENLFANPRNATSGTLKLQDSKVVATRKLDAYLYYMLGENLPANGHYENLL
KAKEWGFKTSDATIKCSTLDEVFAFIKKWDIERKNLPVATDGIVLKVNSLLQQKNLGYTA
KSPRWAIAYKFQAEQEVTRLLSVSYQVGRTGAITPVANLEPVKLSGTTVKRASLYNADAI
DALDLHINDMVYVEKGGEIIPKITRVDTDTREAGNLKVEFIKECPECGTTLVRDEGEAAY
YCPNYMGCPPQIKGRIEHYLTRKAMDIAGGSETVEHLFNAGLIHNVADLYTLQWEQVAEL
ERWAEKSAKNLIQSIADSVNIPYPRVLYALGIRFVGETVAKKVAKAFPSIDLLMQATVEQ
LVEVDEIGERIAQSIVDFFKKEENQDIIRKLRLFGIQFETCGSITDQQTNKLEGLTIVIS
GTFEKHSRDEYKVLIDLNGGKNSGSISAKTNYVLAGANMGPAKLEKAQKLGVKILNEDEF
LKMIE
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggaatctatcgggcagcaaatcgaacagttaagagaagaacttaacatgcataattac
aactattatgtgttgtctaaccccactatatcagattttgatttcgataagaaaatgcag
gaacttatcgacctcgaaacttcacatcccgagtatgcagacccgagttcgccctcgcaa
cgtgtaggcagtgatattaccaagatttttaatcaggtagaacataattatcccatgctt
tcactctccaacacttattcggaagccgaagtggtggagttttacaatcgggtgaaaaaa
gatttaaacgatgatttcgaaattgtttgtgaactgaaatacgatggtgcttcgatctcg
ctcacctataccgatggcaagctgactcaggcggtaaccagaggtgatggtgttaaaggc
gacgatattacagccaacgtaaaaaccatacgaagcatacctttgtcgttaaggggaaac
gactaccctgccctcttcgagattcggggagaaatattgatgccatggaaagtatttgag
gaactcaataaagagagagctgaacaggaagaaaacctttttgccaatccaagaaacgct
acatcggggactcttaaattacaggattcaaaagtagttgcaacccgtaagctggatgcc
tatttatattatatgttgggagaaaatctacctgccaacggacattacgaaaatttattg
aaagccaaggaatggggtttcaaaacttcggacgcaaccattaaatgcagtactctggat
gaagtgtttgcttttataaagaagtgggatatcgaaaggaaaaacttacctgttgcaaca
gacggtattgttctgaaggtaaactctttgttacaacagaaaaatctgggatacactgcc
aaatcgccccgatgggcaatcgcatacaagtttcaagctgaacaagaggttacacgcttg
ttatcggtatcgtatcaggtaggacgcacaggggcaatcactcctgttgccaacttagaa
cctgtaaaattatcgggaacaactgttaaaagagcatcactatacaatgccgatgctatt
gatgctctggatctgcatatcaatgatatggtatatgtagaaaagggtggcgagatcata
cctaaaataaccagagtagatactgataccagagaagcaggaaatctgaaagttgaattt
attaaagaatgccccgaatgtggaacgactttggtaagagacgaaggtgaagcagcttat
tactgccccaactatatgggatgtcctccacaaataaagggacgcatcgagcattacctg
acccgtaaggcaatggatattgcaggcggttcggaaacggttgaacatctgttcaatgcc
ggattgatacacaatgtagccgacctgtatactttgcaatgggaacaggtggcagaactg
gaacgatgggccgaaaagagtgcaaaaaacttgattcaaagtattgccgactcggtaaac
attccctaccccagagtgctttatgcattgggtatacgatttgtgggcgaaacggtagcc
aaaaaagttgccaaagcgttcccttcgattgacctattgatgcaagctactgtggagcaa
cttgttgaagtggacgaaataggtgaacgtattgcacaaagtatagtcgattttttcaag
aaagaagaaaatcaagatattattcgtaaattacgcctgtttggaatacaattcgaaact
tgcggaagtattacagaccaacagaccaacaagctggaaggtttgactattgttatcagc
ggaacatttgaaaagcattcgagagacgagtacaaagttctgatagatctcaatggtgga
aagaatagcggctctatttcggcaaagacaaattatgtattagccggtgcaaatatggga
cctgcgaaattagaaaaagcacaaaagctgggagttaaaatcctgaatgaggatgagttt
ctaaaaatgatagaataa
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