Dysgonomonas sp. HDW5A: G7050_02125
Help
Entry
G7050_02125 CDS
T06482
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dys
Dysgonomonas sp. HDW5A
Pathway
dys03030
DNA replication
dys03410
Base excision repair
dys03420
Nucleotide excision repair
dys03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G7050_02125 (ligA)
03410 Base excision repair
G7050_02125 (ligA)
03420 Nucleotide excision repair
G7050_02125 (ligA)
03430 Mismatch repair
G7050_02125 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dys03032
]
G7050_02125 (ligA)
03400 DNA repair and recombination proteins [BR:
dys03400
]
G7050_02125 (ligA)
Enzymes [BR:
dys01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G7050_02125 (ligA)
DNA replication proteins [BR:
dys03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G7050_02125 (ligA)
DNA repair and recombination proteins [BR:
dys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G7050_02125 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G7050_02125 (ligA)
MMR (mismatch excision repair)
DNA ligase
G7050_02125 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G7050_02125 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Zn_Ribbon_TF
HHH
HNOB
Auto_anti-p27
Zn_ribbon_PADR1
BRCT_2
HHH_3
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
QIK58701
UniProt:
A0A6G7X2T0
LinkDB
All DBs
Position
531457..533454
Genome browser
AA seq
665 aa
AA seq
DB search
MESIGQQIEQLREELNMHNYNYYVLSNPTISDFDFDKKMQELIDLETSHPEYADPSSPSQ
RVGSDITKTFNQVEHIYPMLSLSNTYSEAEVIEFYNRIKKDLNDDFEIVCELKYDGASIS
LTYTDGKLTQAVTRGDGVKGDDITANVKTIRSIPLSLRGNDYPALFEIRGEILMPWKVFE
ELNKERAEQEENLFANPRNATSGTLKLQDSKVVATRKLDAYLYYMLGENLPTNGHYENLL
KAKEWGFKTSDATIKCSTLDEVFAFIKKWDVERKNLPVATDGIVLKVNSLLQQKNLGYTA
KSPRWAIAYKFQAEQEVTRLLSVSYQVGRTGAITPVANLEPVKLSGTTVKRASLYNADAI
DALDLHINDMVYVEKGGEIIPKITRVDTDAREAGNLKVEFIKECPECGTTLIRDEGEAAY
YCPNYMGCPPQIKGRIEHYLTRKAMDIAGGSETVEHLFNAGLIHNVADLYTLQWEQVAEL
ERWAEKSAKNLIQSIADSVNIPYPRVLYALGIRFVGETVAKKVAKAFPSIDLLMQATVEQ
LVEVDEIGERIAQSIVDFFKKEENQDIIRKLRLFGIQFETCGSITDQQTNKLEGLTIVIS
GTFEKHSRDEYKVLIDLNGGKNSGSISAKTNYVLAGANMGPAKLEKAQKLGVKILNEDEF
LKMIE
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggaatctatcgggcagcaaatcgaacagttaagagaagagcttaacatgcataattac
aactattatgtgttgtctaaccccactatatcagattttgatttcgataagaaaatgcag
gaacttatcgacctcgaaacctcacatcccgagtatgcagacccgagttcgccctcgcaa
cgtgtaggtagcgatatcaccaaaacttttaatcaggtagaacatatttatcctatgctt
tcgctctcgaacacctattcggaagccgaagttatagagttttacaatcggataaaaaaa
gatttgaacgacgacttcgaaattgtttgcgaactgaaatatgatggtgcttcgatctcg
ctcacttataccgatggcaagctgactcaggcagtaaccagaggcgacggtgttaaagga
gacgatattacagccaacgtaaaaaccatacgaagcatacctctgtctttaagaggaaac
gactaccctgccctcttcgagattcgaggggaaatactgatgccttggaaagtatttgag
gaactcaataaagagagagccgagcaggaagagaatctttttgccaaccccagaaacgct
acatcggggactcttaaattacaggattcaaaagtagttgcaacccgtaagctggatgcc
tatttatattatatgttgggggaaaatctacctaccaacggacattacgaaaatttattg
aaagccaaggaatggggtttcaaaacttcggacgcaaccattaaatgcagtactttggat
gaagtgtttgcttttataaagaagtgggatgtggaacggaaaaacttacctgttgcaacg
gacggtattgttctgaaagtaaactctctattacaacagaaaaatctgggatacacagcc
aaatcgccccgatgggcaattgcatacaagtttcaagctgaacaagaggttacacgtttg
ttatcggtatcgtatcaggtaggacgcacaggggctatcactcccgttgccaatctggaa
cctgtaaagttatcgggaacaactgttaaaagagcatcgctatataatgccgatgctatt
gatgccctggatctacatatcaatgatatggtatatgtagaaaagggtggcgagatcata
cctaaaataacccgagtagatactgatgccagagaagcaggaaatctgaaagttgaattt
atcaaggaatgtcccgaatgtggtactactctgataagagacgaaggcgaagctgcttat
tactgccccaactatatgggatgtcctccacaaataaagggacgcatcgagcattacctg
acccgcaaggcaatggatattgcaggcggttctgaaacggttgaacatctgttcaatgcc
ggattgatacacaatgtagccgacctgtatactttgcaatgggaacaggtggcagaactg
gaacgatgggccgaaaagagtgcaaaaaacttgattcaaagtattgctgactcggtaaac
ataccctaccccagagtgctttatgcattgggtatacgatttgtgggcgaaacggtagcc
aaaaaagttgccaaagcgttcccttcgattgacctattgatgcaagcaactgtggaacaa
cttgttgaagtggatgaaataggtgaacgtattgcacaaagtatagtcgattttttcaag
aaagaagaaaatcaagatattattcgtaaattacgtctgtttggaatacaattcgaaact
tgtggaagtattacagaccaacagaccaacaagctggaagggttgactattgttatcagc
ggaacgtttgaaaagcattcgagagatgaatacaaagttctgatagatctcaatggtgga
aaaaatagcggctctatttcggcaaagacaaattatgtattagccggtgcaaatatggga
cctgcaaaattagaaaaagcacaaaagctgggagttaaaatcctgaatgaggatgagttt
ctaaaaatgatagaataa
DBGET
integrated database retrieval system
