Dickeya chrysanthemi: Dd1591_4144
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Entry
Dd1591_4144 CDS
T00930
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dze
Dickeya chrysanthemi
Pathway
dze03030
DNA replication
dze03410
Base excision repair
dze03420
Nucleotide excision repair
dze03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dd1591_4144
03410 Base excision repair
Dd1591_4144
03420 Nucleotide excision repair
Dd1591_4144
03430 Mismatch repair
Dd1591_4144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dze03032
]
Dd1591_4144
03400 DNA repair and recombination proteins [BR:
dze03400
]
Dd1591_4144
Enzymes [BR:
dze01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Dd1591_4144
DNA replication proteins [BR:
dze03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dd1591_4144
DNA repair and recombination proteins [BR:
dze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Dd1591_4144
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dd1591_4144
MMR (mismatch excision repair)
DNA ligase
Dd1591_4144
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dd1591_4144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
Nlig-Ia
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACT08940
UniProt:
C6CQ63
LinkDB
All DBs
Position
complement(4675241..4676923)
Genome browser
AA seq
560 aa
AA seq
DB search
MRYQYALAAVWFLVSGFANATPCPAWSSARAEREVTQLGQQLTQWDNAYYEQGRSPVDDQ
VYDQLRQTLATWQRCFQSDTERFAIRLSSTGKQSHPVAHTGLKKLSEPTELKQWVARHDG
LWVQPKIDGVAVTLVYEQGKLVSAVSRGNGRQGEDWTDKVRQINAVPQALSGMSGRQIFQ
GELYLPVTEHRQYVSGGINARAQVAGEMRRKQPSPLLSRLGVFIWAWPDGPADMPTRLAK
LREMGFGLTADYTQAISSLEAAAQWRERWYRAPLPFVTDGVVLRQAKEPAGRYWQDTPAE
WAVAWKYPLMNQVTEVTGVDVEIGRTGRMTVVLQLQPVMLDDKSVSRVNLGSVGRWRQWD
VLPGDRVSISLAGLGIPRLDAVVWRAAVRESITVPAVSPFDVFSCLQWSRECQPQFLARL
VWMSGRNGLSLSGISEATWRRLAQRGTLADVVSWLALEPAQLAAAGDFNEQQAARIYRQL
QQARRQPLRRWLLALGLPVPSSARYALEGASLEQLQQRSIVEWQQFSGIGARRAQRIRDF
LHHPEIVRQLAWLNEQGVKS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgcgatatcaatacgcgctggcggcagtgtggtttttagtgagcggttttgccaacgcg
acgccttgtccggcatggtcgtcggcgcgcgctgaacgggaggtaacccaactggggcaa
caactcacgcagtgggacaatgcgtattacgagcagggccggagtccggtagacgatcag
gtttatgaccagttgcgtcaaacgctggccacctggcaacgctgttttcagtcggatacc
gaacgttttgcaatacgcctgtcgtcaacaggtaagcaatcacatccggtggcgcatacc
ggcctgaaaaaactgtctgaaccaaccgagttgaaacagtgggtggctcggcatgatggc
ctatgggtacaacccaagatcgatggcgtagcggtgacgctggtctacgaacaagggaaa
ctggtgagcgccgtcagtcgcggcaatgggcgtcagggcgaagactggaccgataaggta
cgccagattaacgcggtgccgcaggcgctctccggcatgtccggccgccagatttttcag
ggtgagttgtatttgccggtaacggaacaccggcagtacgtgtccggcggcatcaatgcg
cgggcgcaggtggcgggtgaaatgcggcgaaagcagccgtcgccgctgttgtcccgcctt
ggcgtatttatctgggcctggccggacggcccggcagacatgccgacgcggctggcgaaa
ttacgggagatggggtttgggctgaccgcagattacacacaagccatttcctctctggag
gcggcggcacagtggcgtgagcgctggtatcgtgcgccgctgccgtttgtaaccgatggc
gtcgtgttacgccaggcgaaggagccggcgggtcgttactggcaggataccccggcggaa
tgggccgtggcctggaaatacccgttgatgaatcaggtgacggaggtcaccggcgttgat
gttgaaataggacgtaccggcagaatgactgtggtactgcaactgcaaccggtcatgctg
gatgacaagagcgtgagtcgggtcaatctcggctcggttggtcgctggcgacaatgggat
gttttaccgggggatcgggtcagcatcagtctggcggggttggggattccccggcttgac
gcagtggtatggcgcgcagcggtgcgagagtcgataaccgttccggctgtatcgcctttt
gatgttttcagttgtttgcaatggagtcgggagtgccagccgcagtttctggctcggctg
gtatggatgagcggtcgcaacgggttgtcgctcagcggtatcagcgaagcgacctggagg
cgcctggcgcagcgcggcacgctggccgacgtggtgtcctggctggcgctggagcccgct
cagttggcggcggccggtgatttcaacgaacaacaggcggcgcggatttatcgccagttg
cagcaggcgcgccgccagccattgcggcgctggctgctggcattaggattacccgtgccc
tccagcgcccggtatgcgttggagggggcctcgctcgaacagttgcaacaacgctcaatc
gtggagtggcagcagttttccggtatcggcgctcggcgagcacagcgcattcgggatttt
ctgcatcacccggaaattgtccgccaactggcatggctcaatgaacaaggcgtgaaatca
tga
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