Durio zibethinus (durian): 111303467
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Entry
111303467 CDS
T05242
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dzi
Durio zibethinus (durian)
Pathway
dzi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dzi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
111303467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dzi03400
]
111303467
Enzymes [BR:
dzi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111303467
DNA repair and recombination proteins [BR:
dzi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
111303467
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
TPGS1_C
Motif
Other DBs
NCBI-GeneID:
111303467
NCBI-ProteinID:
XP_022755487
UniProt:
A0A6P5ZSH9
LinkDB
All DBs
Position
Unknown
AA seq
1206 aa
AA seq
DB search
MTEEVKLSVVVSLFTWIQKSRTSAKKRSKFRKFLDTFCKPSDYFSAMRLILPSLDRERGT
YGLKESVLAVCLIDALGMSRDSSDALRLINWRKGGANTGASAGNFALVAAEILQRRQGTA
SGGLTIKELNDLLDHLASAESRAEKTAILSTLINKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRIQRHKRQDIEVGKAVRPQLARRVYDPASAWK
KLHGKEVVVECKFDGDRIQIHKNRMEIHYYSRNFLDHPEYEHGMSNIIAQNILVDRCILD
GEMLVWDSTLNRFADFGSNQEIAKAAKDGLDSERQLCYVAFDILYVGDTSVIHQSLKERH
ELLQKVVKPLKGHLEILVPNGGLNAHRPPGEPCWSCVTYSVDDVERFFKETIENRDEGII
LKDLGSKWEPSDRSGKWLKLKPDYIHAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLADRP
DPNAYPRRFLSFCRVGTGLTDDDLETVVKKLKPYFRKYEYLKKTQPSFYQVTNNSKERPD
VWIESPEKSIILSITSDIRTIRSEVFAAPYGLRFPRIDRVRYDKPWHECLDVQSFVELVH
SSNGTTQKGTEQGNQKDGKTKRKEHTRKADKKSVHIVPSHFIRTDTSSVKGETLIFSNLM
FYFVNVPPTYSLDSFHKMIVEHGGMFSMNLNNSVTHCVAAESKGIKYQAAKFHGEIIHYS
WVLDCCSQKKLIPLQPKYFLFLSESSKKKLQQEVDQYSDPYYWDLDLADIKQLLNNIQRS
ENSNTIDYYRKKYCPKDRWSLFHSCSFYFYCSAHSLKADWQILLRLALKRLKLEVLMGGG
KISENLNHATHLVVLSAPALDVNFDSLINRLLFRFMKLRKIGFCETFEASFSFAEKNLMW
KKGFHVVGSQWLENCLEQGQKLQEDQYSLKPIEVEETNFLESKLLQNLKEAVPDFNSVQN
QVTTASPESKIKQRGGKDHLEKSISLVPPNHGNRKRRRPASNNTKEGKTVVSQAQRVPRR
RGKMSVKINEDISEESGSDDKTNEEEIEKGKGKMERYGMVGRENYEFHQNQVVEDIELSE
LEAAENASKTWCNKASDVVMCETKNDQGCKKAEKFDLMEQDEGDCGHDSAKSEKLEVMVD
PVQAMLLDMIPSLGIKHVETTNSVVENEKTGADNKAEIPVADNSEQPVKKKKVSYKDVAG
ELLKDW
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggaagtgaagttgagcgtggtagtgagcctgttcacgtggatccagaagagc
agaacatcggcgaagaagcggtctaagtttcgcaaattccttgacaccttttgcaagcct
tccgactacttcagcgccatgaggcttatccttccctccctcgacagagagcgtggcact
tacggcctcaaggagtcggtgctcgccgtctgcctcattgacgctcttggcatgtccagg
gactcctccgatgctctccgtcttatcaattggcgcaagggtggtgccaacaccggcgcc
agtgctggaaacttcgctcttgtcgccgccgagattctgcagcgtaggcaaggaacggct
tccggcggactcaccatcaaggaattgaatgacttgcttgatcacttagcttcggctgaa
agcagggccgagaagactgcaatcctttctactttgattaataagacaaatgcacaggaa
atgaagtggattatcatgataattctaaaagatctcaagttgggaattagcgagaagagc
atatttcatgaatttcaccctgatgccgaagacttgtttaatgtcacatgtgacctaaaa
ttggtttgtgaaaagttaagggaccgtattcaacgtcataagcgtcaggacattgaggtt
ggaaaggcagtacgtccacaactagctaggagagtctatgatccagcttctgcatggaaa
aagcttcatggtaaggaggtagttgttgagtgtaaatttgatggtgatcgcatccaaatc
cacaaaaatagaatggagatacattactactccaggaattttcttgatcaccctgaatat
gagcatgggatgtcaaatattattgcacaaaatattttggttgataggtgtatacttgat
ggagaaatgttagtttgggattccactttaaatcggtttgccgatttcggatcaaatcag
gaaatagccaaggcagcaaaagatggccttgatagtgaaagacagttatgctatgttgca
tttgatattctttatgttggagatactagtgtcattcaccaaagcttgaaggaacgtcat
gaacttcttcaaaaagttgtaaagcctttgaagggtcatttagagattttagtgcctaat
ggtggtcttaatgcacatcgtcctcctggggaaccttgttggtcatgtgtcacatacagt
gtggatgatgttgagagatttttcaaggaaactattgaaaatagggatgaaggaatcata
cttaaagaccttggttccaagtgggaaccaagtgatagaagtggaaagtggttgaagttg
aagcctgattacattcatgctggttctgacttagatgttctcatcattggaggatattat
ggttctggacgtcgaggaggagaggtagctcaattcttagtaggcttagcagatcgtcca
gacccaaatgcttatcccaggcgatttctatccttttgcagagttggtactgggctgact
gatgatgacttggaaactgtagtaaagaaattgaagccttattttaggaaatatgaatac
ttgaagaagacacaaccaagtttttatcaagtcacaaataactcaaaagagagacctgat
gtttggattgaaagcccagagaaatcaatcattctttctatcaccagtgatatcaggact
ataaggtctgaggtatttgctgcaccatacggcctcagatttccacgcattgacagagtg
agatatgataagccttggcatgagtgccttgatgtgcaatcatttgtagaacttgtgcat
tcaagtaatggtaccactcagaaagggacagaacagggaaaccagaaagatggtaaaaca
aagcgcaaggaacacactagaaaggcagacaaaaagagtgtccatattgttccttctcat
tttattcggaccgacacatccagtgtgaagggagaaaccttaatattttcaaatcttatg
ttttactttgttaatgtgcctccaacatattctcttgattcatttcacaaaatgattgtg
gagcatgggggaatgttctcgatgaatttgaacaactcagttacccattgtgttgcagct
gaaagcaaagggatcaagtatcaggcagcaaagtttcatggagaaattatccattactct
tgggtcttggattgttgctcacaaaagaagctcattcctttgcagccaaagtactttctt
tttctttctgaatcatcaaagaagaaattacagcaagaagttgatcaatattctgaccca
tactattgggaccttgaccttgcagatatcaaacagctcttaaacaatatccaaaggtca
gagaactccaacacaattgactattatagaaagaagtactgtccaaaggatagatggtct
ctgtttcatagctgctctttttacttctactgttcagctcattctttgaaagctgattgg
caaatcttgttgagacttgcactgaagaggttaaagcttgaagttttaatgggtggtggc
aaaataagtgagaatctcaaccatgcaacccatttggtagtcctatcagcaccagcattg
gatgtgaactttgattctcttattaataggcttctttttaggtttatgaagctcagaaaa
ataggtttttgtgaaacatttgaggcaagtttctcttttgcagagaaaaatcttatgtgg
aagaaggggtttcatgttgtgggatctcagtggttggagaattgcttagagcaggggcag
aagttgcaagaagaccaatatagcttgaaacccattgaagttgaagaaacaaacttcttg
gaaagcaaactactccaaaatctgaaagaagctgtgccagatttcaacagtgttcagaac
caggttacaaccgcatctcctgaaagtaaaataaaacagagaggcggcaaagatcaccta
gaaaaatcaatttcattggtcccacctaatcatggcaacaggaagagaagacgacctgct
agcaataacacaaaggaaggaaagacagttgtaagccaagctcaaagagtaccaaggcgt
cgtggaaagatgtctgttaagattaatgaagacatatcagaggaaagtggttctgatgac
aaaacaaatgaggaagaaatagagaaaggtaaagggaaaatggaacgctatggaatggtt
ggtagggaaaattatgaatttcaccaaaatcaagtagtggaagatatagaattgtctgaa
ctagaggctgcagaaaatgcgagcaaaacatggtgtaataaagcttctgatgttgtgatg
tgtgaaacaaaaaatgaccaaggctgcaagaaggctgagaagttcgaccttatggagcag
gatgaaggggattgtggccatgacagtgcaaagtcagaaaagctagaagttatggttgat
ccggttcaggccatgttactggacatgattccaagcctcggaataaagcatgttgaaact
acaaattcagttgttgagaatgagaaaacaggtgcagataacaaagcagagattcctgtt
gcagataacagtgaacagccagtaaagaaaaagaaagtaagttacaaggatgttgccggg
gaactactcaaggattggtaa
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